Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0251 ATGGCTTACAGACGCAGCCTCTCTGCGACAGTGAGTACAGGAGCAAGACGTTGCAACCCGTCTTTTGCGTACGTTCTCCACGACAAGGAAGATAACAAGGACCGATTTAAGGACAGAGACTTTTCTAAACAACAAGAGATTAATAATTTTCTCCATAAGAGGTGTTATGGCAGTTGCTTTAGCAAGTTAGGTGGAGGATATAGTGCTAGTGGCTTTGCCCATGTGAGCAGATTAAGTACCTCTTTATGCCGGTACATGTCAATTAGTATCAATGAAGAAGGGTCTTTGGATAAGATTGAACTAATGAGCGATATGGCAGAAGTTATATCAGATACAACTGTGGATCAAGCAGTAGCTTCCGCTTCCGCATTGAATGAAGTTGCTATTGCTGCTGCTGATTCTTTCCTCCCTATCAAGGGTTTGCAGCACTTAATAGATGTTGTGCATTGTTATACGGGATTGAATTGGTGGGCTTCTATAGTTGTAACAACTCTTTTGATTCGAGGAGTGACTCTGCCTCTTTTGATAGATCAACTTAAATCTACTGCGAAGCTCACTCTCTTGAGGCCACACCTAGAGGAAATAAAGCAACAAATTAAAGAAAAGGATATGGATCCTATGGCAATGGCTGAAGGTCAAAGACAAATGCAAAGGCTATTTAAGGAATATGGGGTTACTCCGTTTACTCCAATGAAGGGACTCTTTATTCAGGGTCCTCTCTTCATTTGTTTTTTCCTCGCAATATCTAACATGGCAGAAAAAGTTCCATCATTCAAAACGGGTGGAGCTTACTGGTTTCTCGATCTAACTACTCCAGACAGTCTATACATTTTTCCGGTTTTAACCGCATTGTCCTTCTGGATCGCAGTGGAGTACAATATGCAAGAAGGAATGGAAGGAAATCCAGTAGCTGCCACGATGAAAAATGTATCAAGAGGTCTTGCTATAGCTACAGTTCCCTTAACCCTGGCTTTTCCAAAGGCAATATTTTGTTACTGGCTCACATCAAACTTGTTTTCCCTCATGTATGGAGCTGTTCTGAAAGTTCCTGGGGTGAAGAAATCATTAGGTCTTCCTGAAATACTGATCCAACAGCAGAACAAAACAGAACAACAACCCGACGCTTTCTCTCTATTTACACCATTGAAACCATCCAATATTGAAATGAGGCAAGAATCTACCTCACCAGCTTCTGACCGATCATCATCAAAGCTTGAAGATCGGAAAATATCGTCATCCTCTATAATCAGTCAGAGGCTAAGAAGCTTAGAGAAACAAGTGAAGGCAAGAAAGAAGACTCAAAAGAAGTGA 1311 41.34 MAYRRSLSATVSTGARRCNPSFAYVLHDKEDNKDRFKDRDFSKQQEINNFLHKRCYGSCFSKLGGGYSASGFAHVSRLSTSLCRYMSISINEEGSLDKIELMSDMAEVISDTTVDQAVASASALNEVAIAAADSFLPIKGLQHLIDVVHCYTGLNWWASIVVTTLLIRGVTLPLLIDQLKSTAKLTLLRPHLEEIKQQIKEKDMDPMAMAEGQRQMQRLFKEYGVTPFTPMKGLFIQGPLFICFFLAISNMAEKVPSFKTGGAYWFLDLTTPDSLYIFPVLTALSFWIAVEYNMQEGMEGNPVAATMKNVSRGLAIATVPLTLAFPKAIFCYWLTSNLFSLMYGAVLKVPGVKKSLGLPEILIQQQNKTEQQPDAFSLFTPLKPSNIEMRQESTSPASDRSSSKLEDRKISSSSIISQRLRSLEKQVKARKKTQKK 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1337171 1340117 + Conep12aG0025600.1 Cone12ag0251 449095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0251 436 MobiDBLite consensus disorder prediction 387 413 - -
Cone12ag0251 436 Pfam 60Kd inner membrane protein 156 343 IPR028055 -
Cone12ag0251 436 PANTHER OXA1 78 382 IPR001708 GO:0016020(InterPro)|GO:0031305(PANTHER)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0032979(PANTHER)|GO:0051205(PANTHER)
Cone12ag0251 436 CDD 5TM_Oxa1-like 153 350 - -
Cone12ag0251 436 NCBIfam membrane protein insertase YidC 155 342 IPR028055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0251 K03217 - - csv:101223070 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0251 Cone-Chr12:1337171 Cone6ag0851 Cone-Chr6:4349333 8.04E-165 wgd
Cone12ag0251 Cone-Chr12:1337171 Cone9ag0852 Cone-Chr9:4163170 4.59E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003609 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 4 1 47