Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0261 ATGGAAGAAGAAGTAGTGGGTGACGAAATGATCCTATTGGATACATCAGAGGGTGCACACAAGGCCAGGCAAGAGTCTCAGCAGGAGATCGAGTATTCACTGAGACCTGAGACCTGCAATCTGTTAGAATTGGAAGAAATACGTATACCAGTTGAAGTTGAGTATTCACAGGGTTATCCTCAAGAATTTGCAGATCTTTTAGTCAGTAAGAATATAGATAGGAGTATAAGCCATGCTTCGGATCACCCAGATACTAGCCCACACCGCATGGAAGATGCTAGTGTGAGGGTTGAAGAATTAACTGTTAAAAACTATGATTGTTCAAATTTAGCTGTTGTTGGTACTTCAAATAATAGAAGAAAATTACTTATCAAGAAGAATGGGTGGCAGCATCTATATCAGCTGGGAAGTGGATCGGGAAGTGGAAGCTCATGTGCGGATACTGCTTACAGGGATACGGGTCAGAACCAGATGATGGCTAGTGGGATGAAGGATCTTCGACACACATCTTATCCAACCGAGCTTTTGGCGGTAAGGCCATGTAGTGATGACCCCAACAAAGTCTTAGAAGAATCAATGAATCCCGAGGCTAAACCGGTTCTTGGGAATAATCAGGGGGGTATTCGGACTAAGATTCTATCAAAATCAGGGTTTTCTCAGTTTTTTGTAAAAAATACATTGAAGGGTAAGGGGATTATACATAGGGGCCCACCTAATGATGTGAGGCCTGGAAACCTCAATAGTACAAAGAATGCTTCTGGTGCTATTGTTGCTTCTGATGCGTCGCCACAGCTTATTGTCAAAACTGGCATGCCCTCTTTTTATAGGAAACGAGAGCCCAGATCTATTGGTTCTTCTCTTTTTGGCGATAGTCTGAGAGAATGGCTAAGAGCTGACCGGCATAGAGCAATTAAAGTTGACTGCTTGTATATATTTAGACAGATTGTGGAACTGGTTGATTGTTCTCATTCACAAGGAGTTCCCTTGCATAACTTACAACCATCTTCATTCACAGTATTGGCATCAAAGAAGGTTAAGTATATAGGATCACCTCTCCCAGGAGAGATTCCAAAGAGTGGTATAGGTGAAAACCATCATTATCCGGAGAATAGTCTTGGTGGGAAAAGACTATTAGAGCAGGGAGTATTTCATTCCTCGGGTTCTTCAAAGAAGAAAAAGTTTCCCCATGAATCAAAATTTACAGTTAAGTGGCCTCATCTTCCTTCAGGGTCTGCCTTTAATCTTGAAACTGTAAATGTAAGGGATTGTAACATTACTGATGCACCAAATTCTCTCAATGAATTTGGTGAACATGATCAAAGTACAGAACACGGAAGCAGGAGCAAGTTTATGGGCCCTTACATGACTTATTCAGATCAGATGTCTCTTTTGACTGACCGGTTGGAAGAAAAGTGGTATGCTAGTCCAGAAGAACTCAATGAAGGAGGCTGCACAATTTACTCAAATATATACTCTCTGGGAATTCTTCTTTTTGAGTTACTTTGCTGTTTCGACTCAGATAGCGAACATGTTTCAGCAATGTCAGATTTGCGTCATAGGATTCTTCCTCCAAATTTTCTCTCAGAGAATCCAAGAGAAGCTGGATTCTGTCTTTGGCTACTTCATCCTGAATCTTTAGCACGACCAACAACAAGGGACATTCTAGAATCTGAAGTATGTAGTGGATTGCCTGAAGTTTCAGGAGAAGAACTGGCATCATCTGTTGACCAAGATGATGCCGAATCATCGTTACTAATGGAATTCCTTGCATCATTGAGAGAACAGAAGGGGAAGCATGCCTCCAAATTAGCCGAAGATGTTCGGTGCTTAGAAGTCGATATCAGAGAAGTGGAAAGAAGGCATGGTTCAAGAAAATCCTCGGTTCTTTCTTACTTACCCACCAACTCCCTTAATGGAAGGGAGAATCTGCACGTTGACATCGAACCTTCTGGTTTGAATGTCTATTCTCAAGCAACCTCTATTAATATTAATGAAGTGAGACGTGAGAGAAATATCAGTCAGCTTGAAAATGTTTACTTCCAAATGAGATCCAAAATCCAGGTCCCAGAAAATGATGCTATGACAAGGACAGATACTGATTTACTAACAGCTCGTGAAAGCTGGTATCTGACCCAGAAAGATGAAGAGAAAGGGTATACAACTGATCGCCTAGGGGCCTTTTTTGATGGTTTTTGCAAGTATTCTCGTTACAGTAAATTTGAAGTGTGTGGGGTGCTAAGAAATGGGGATTTCAGTAGCTCTTCAAATGTAATTTGTTCATTGAGTTTTGATCGCGATCAGGACTATATTGCAACTGCTGGAGTGTCGAAGAAAATAAAGATATATGAGTTTAACACACTCTTTAATCACTCAGTTGACATTCATTATCCAGCAACTGAGATGATAAACAGATCTAAGCTCAGCTGCGTTTGCTGGAACAGCTACATAAAGAACTACCTTGCTTCAACCGATTATTGTGGTGTAGTAAAGTTATGGGATGCATGCACTGGTCAAGAAACCACTCAGTACGTTGAACATGATAAAAGGGCTTGGTCTGTTGATTTTTCTCATGTCTGTCCCACAAAATTGGCTAGTGGCGGTGATGATTGTTCTGTAAAGCTGTGGAGCATAAATGAGAAAAACTGTGTGGGTACAATCAGGAACATTGCAAATGTCTGTTGTGTTCAGTTCTCTTCTCACTCCTCTCAGCTTCTAGCTTTTGGCTCAGCCGATTACAGAACCTATTGCTACGATCTTCGTAACACTAAGGCACCCTGGTGTGTCTTAGGAGGCCATGAGAAAGCTGTGAGCTATGTCAAATTCCTCGACTCTCAAACCCTCGTTTCCGCTTCCACTGACAACACCTTGAAAGTATGGGATCTTAACAGAACCAATCCTATTGGTTCAACCAATGCTTGCAGCCTAACTCTTAGTGGGCACACTAATGAAAAGAACTTTGTCGGTTTATCGGTTTCTGATGGTTACATAGCCTGTGGTTCGGAAACAAATGAGGTTTATGCTTACCAGAGATCTCTCCCTATGCCAATCACTTCCCATAAGTTTGGTTCTATTGACCCCATTTCCGGTAAGGAAACGGAGGATGACAATGGCCAGTTTGTGTCGAGTGTATGCTGGAGAGGAAAATCTGACATGGTTGTTGTTGCCAATTCAAGTGGGTGTATAAAGGTGTTACAGATGGTTTAG 3204 41.6 MEEEVVGDEMILLDTSEGAHKARQESQQEIEYSLRPETCNLLELEEIRIPVEVEYSQGYPQEFADLLVSKNIDRSISHASDHPDTSPHRMEDASVRVEELTVKNYDCSNLAVVGTSNNRRKLLIKKNGWQHLYQLGSGSGSGSSCADTAYRDTGQNQMMASGMKDLRHTSYPTELLAVRPCSDDPNKVLEESMNPEAKPVLGNNQGGIRTKILSKSGFSQFFVKNTLKGKGIIHRGPPNDVRPGNLNSTKNASGAIVASDASPQLIVKTGMPSFYRKREPRSIGSSLFGDSLREWLRADRHRAIKVDCLYIFRQIVELVDCSHSQGVPLHNLQPSSFTVLASKKVKYIGSPLPGEIPKSGIGENHHYPENSLGGKRLLEQGVFHSSGSSKKKKFPHESKFTVKWPHLPSGSAFNLETVNVRDCNITDAPNSLNEFGEHDQSTEHGSRSKFMGPYMTYSDQMSLLTDRLEEKWYASPEELNEGGCTIYSNIYSLGILLFELLCCFDSDSEHVSAMSDLRHRILPPNFLSENPREAGFCLWLLHPESLARPTTRDILESEVCSGLPEVSGEELASSVDQDDAESSLLMEFLASLREQKGKHASKLAEDVRCLEVDIREVERRHGSRKSSVLSYLPTNSLNGRENLHVDIEPSGLNVYSQATSININEVRRERNISQLENVYFQMRSKIQVPENDAMTRTDTDLLTARESWYLTQKDEEKGYTTDRLGAFFDGFCKYSRYSKFEVCGVLRNGDFSSSSNVICSLSFDRDQDYIATAGVSKKIKIYEFNTLFNHSVDIHYPATEMINRSKLSCVCWNSYIKNYLASTDYCGVVKLWDACTGQETTQYVEHDKRAWSVDFSHVCPTKLASGGDDCSVKLWSINEKNCVGTIRNIANVCCVQFSSHSSQLLAFGSADYRTYCYDLRNTKAPWCVLGGHEKAVSYVKFLDSQTLVSASTDNTLKVWDLNRTNPIGSTNACSLTLSGHTNEKNFVGLSVSDGYIACGSETNEVYAYQRSLPMPITSHKFGSIDPISGKETEDDNGQFVSSVCWRGKSDMVVVANSSGCIKVLQMV 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1376878 1382016 + Conep12aG0026700.1 Cone12ag0261 449105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0261 1067 ProSiteProfiles Trp-Asp (WD) repeats profile. 843 885 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 PANTHER PROTEIN SPA1-RELATED 2 22 1067 IPR044630 GO:0009640(InterPro)
Cone12ag0261 1067 Gene3D Transferase(Phosphotransferase) domain 1 289 566 - -
Cone12ag0261 1067 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 726 1067 - -
Cone12ag0261 1067 Coils Coil 600 620 - -
Cone12ag0261 1067 ProSiteProfiles Trp-Asp (WD) repeats profile. 929 969 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SUPERFAMILY Protein kinase-like (PK-like) 288 562 IPR011009 -
Cone12ag0261 1067 Pfam WD domain, G-beta repeat 928 960 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 Pfam WD domain, G-beta repeat 840 876 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 Pfam WD domain, G-beta repeat 754 782 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 929 962 - -
Cone12ag0261 1067 SUPERFAMILY WD40 repeat-like 753 1063 IPR036322 GO:0005515(InterPro)
Cone12ag0261 1067 ProSitePatterns Trp-Asp (WD) repeats signature. 947 961 IPR019775 -
Cone12ag0261 1067 Gene3D - 727 1067 IPR015943 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 1017 1065 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 922 960 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 794 833 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 879 918 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 739 783 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 970 1009 IPR001680 GO:0005515(InterPro)
Cone12ag0261 1067 SMART WD40_4 836 876 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0261 K16240 - - csv:101211350 1190.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0261 Cone-Chr12:1376878 Cone15ag1054 Cone-Chr15:8721448 3.54E-168 dispersed
Cone12ag0261 Cone-Chr12:1376878 Cone8ag0255 Cone-Chr8:1460573 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39