Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0265 ATGGAAGAAGCTCTGCGAATTTTTTCTTCCATCTTCATTCTGGGTTACATTTTAACTATAATTAAGGCTGACCCAGTTGAAGATAAGCAAGCTTTGGTAGATTTTGTGAACAATCTTCCTCATTCTCGTTCTCTTAACTGGAATGAGAGCTCTCCAGTATGCAATCACTGGACCGGAGTAACTTGCAGTGAAGATCACAGTCGAGTTATAGCCGTCCGATTGCCCGGAGTTGGATTCCATGGTCCTATTCCAGCCAACACAATTAGTCGCCTTTCCGCCCTGCAAATCTTGAGCCTCAGATCTAATGGTATAAGTGGAAATTTCCCATCTGATTTCTCTAACCTCAGAAACTTATCTTACCTGCATCTTCAGTTCAATAACTTTTCCGGTCCGCTGCCTTTAGATTTTTCTGTTTGGAAGAATCTCACTTTTGTAAATCTCTCTAACAATGGCTTCAATGGAAGCATTCCTGATTCCCTGTCGAACTTGACTGAGCTTGCTGGTTTGAATCTTGCAAACAACTCCCTTTCCGGTAAAATTCCGGATCTTCAGTTGCCTAAGTTACAAATTCTAAATTTATCCTTCAACAATCTGAATGGTAATGTGCCTGAATCACTCGCTAGATTTCCTCAGTCTGTGTTTCTTGGAAATCACATCTCTTTTGAAAATTTAGACCCAGATGTTCCTCCTGTTCCTGCTCAACCTTCGCCCAATTCATCATATAAGAAGTCAAGGAGAAATTATGGGAAGCTAGGTGAAACGGCATTTTTAGGGATTATAATTGCAGGTTCTCTTTTGGGGATTGTAGCATTTGGTTTTCTGGTCCTCATTTGTTTCTTGATAAAAAAGAGAGAAGATGGTCTTGTTGGGAAATTGCAGAAGGGTGGAATGTCGCCTGAAAAGGTGATTTCAAGGACCCAGGACGCTAACAATAGGCTGGTGTTTTTTGAAGGGTGTTGTTATGCATTTGACTTGGAGGATTTGTTGAGGGCTTCTGCCGAGGTGCTTGGAAAAGGTACATTTGGAACGGCTTATAAGGCAATTCTTGAGGACGCAACTGCAGTTGTGGTGAAGAGGTTGAAGGATGTGAACGTTGGGAAAAGAGATTTCGAGCAGCAGATGGAAATTGTGGGTGGGATTAAGCATGAGAATGTGGTTGAGTTGAAGGCATATTACTATTCGAAAGATGAGAAGCTTATGGTGTATGATTATTTTAGCCAGGGGAGCATCTCGGCTTTGTTACATGGTAAAAGAGGAGAGGACAAAAAAACCCCATTGGACTGGGATTCAAGACTCAGAATAGCTATAGGTGCAGCAAGAGGCATAGCCAGAATCCACGAAGAAAACGGCGGGAAACTAGTCCATGGAAACGTCAAATCCTCAAACATCTTCCTCAACTCAAACAACTATGGCTCTGTATCCGATGTTGGCCTGACCCCAATAATGAGCTCTCTGACTCCACCCATATCACGAGCAGCCGGTTACCGGGCCCCAGAAGTAACTGACACCCGAAAAGCATCACAGCCGTCTGATATCTTCAGCTTCGGAGTCGTTCTCTTAGAACTCCTCACGGGAAAATCTCCCATTCACACCACTGGAGCCGATGAGATCGTCCACTTGGTCAGGTGGGTCCACTCTGTTGTCCGGGAAGAGTGGACCGCCGAAGTGTTTGACATTGAGCTCATGAGGTTTCCAAACATCGAGGAAGAGATGGTTGAGATGTTGCAGATTGCTATGTCATGTGTGGCTAGAGTGCCTGATCAAAGACCAAAAATGGTTGATGTGGTGAAGATGATTGAGAATGTTCGTCCGATTGAAAATGAGGATGGTACTAAGGCTTTGTCGGGAAACAGATCGGAGAGCTCAACCCCAGTCTTGATGTTTTGA 1887 43.88 MEEALRIFSSIFILGYILTIIKADPVEDKQALVDFVNNLPHSRSLNWNESSPVCNHWTGVTCSEDHSRVIAVRLPGVGFHGPIPANTISRLSALQILSLRSNGISGNFPSDFSNLRNLSYLHLQFNNFSGPLPLDFSVWKNLTFVNLSNNGFNGSIPDSLSNLTELAGLNLANNSLSGKIPDLQLPKLQILNLSFNNLNGNVPESLARFPQSVFLGNHISFENLDPDVPPVPAQPSPNSSYKKSRRNYGKLGETAFLGIIIAGSLLGIVAFGFLVLICFLIKKREDGLVGKLQKGGMSPEKVISRTQDANNRLVFFEGCCYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKDVNVGKRDFEQQMEIVGGIKHENVVELKAYYYSKDEKLMVYDYFSQGSISALLHGKRGEDKKTPLDWDSRLRIAIGAARGIARIHEENGGKLVHGNVKSSNIFLNSNNYGSVSDVGLTPIMSSLTPPISRAAGYRAPEVTDTRKASQPSDIFSFGVVLLELLTGKSPIHTTGADEIVHLVRWVHSVVREEWTAEVFDIELMRFPNIEEEMVEMLQIAMSCVARVPDQRPKMVDVVKMIENVRPIENEDGTKALSGNRSESSTPVLMF 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1407746 1411559 - Conep12aG0027100.1 Cone12ag0265 449109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0265 628 SUPERFAMILY L domain-like 38 211 - -
Cone12ag0265 628 MobiDBLite consensus disorder prediction 612 628 - -
Cone12ag0265 628 MobiDBLite consensus disorder prediction 226 245 - -
Cone12ag0265 628 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cone12ag0265 628 Gene3D Ribonuclease Inhibitor 26 236 IPR032675 -
Cone12ag0265 628 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Cone12ag0265 628 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 405 612 - -
Cone12ag0265 628 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515(InterPro)
Cone12ag0265 628 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515(InterPro)
Cone12ag0265 628 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Cone12ag0265 628 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515(InterPro)
Cone12ag0265 628 Gene3D Transferase(Phosphotransferase) domain 1 405 620 - -
Cone12ag0265 628 FunFam Probable inactive receptor kinase RLK902 25 184 - -
Cone12ag0265 628 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524(InterPro)
Cone12ag0265 628 Pfam Protein tyrosine and serine/threonine kinase 334 598 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0265 628 FunFam pollen receptor-like kinase 1 299 404 - -
Cone12ag0265 628 SUPERFAMILY Protein kinase-like (PK-like) 334 599 IPR011009 -
Cone12ag0265 628 PANTHER OS05G0588300 PROTEIN 14 607 IPR050994 -
Cone12ag0265 628 ProSiteProfiles Protein kinase domain profile. 330 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0265 628 MobiDBLite consensus disorder prediction 609 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0452 Cone-Chr10:2098194 Cone12ag0265 Cone-Chr12:1407746 1.68E-158 dispersed
Cone12ag0265 Cone-Chr12:1407746 Cone5ag0660 Cone-Chr5:2816135 2.27E-171 dispersed
Cone9ag1338 Cone-Chr9:10055351 Cone12ag0265 Cone-Chr12:1407746 3.94E-49 dispersed
Cone12ag0265 Cone-Chr12:1407746 Cone8ag0259 Cone-Chr8:1498559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81945 PF00588 SpoU_methylase 1.20E-29 CL0098 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0265 - - - 0.0