Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0267 ATGGAATCCGAAACCTCGCCTGCCGGCGGTGGGCGGCTCACCGGAGGATCAGCTCCCGATCCAGATTTCTCCTTCGCTTTCAACGAAAGGAACTTTTCCGATCGAGTTTTGAGGATTGAGATCATTTCGGATTCTACGGAGAACAAATCGGACGGTGAAGGTTGCAACAGTATTGCTGATTGGGCTCGTAACAGGAAGAGAAGAAGAGAGGACAACAACAAGAAAGAAAGTGCCGTGGATGTTGTTTTGAACTGTGAGGAGCAGATTCCCAACTGTAATATGCCAGACACAGAGGATGGTGGTGCCTATGAAACTCAAGATGAGGATGCTGATGCAATGATTGAAGAATCACCTTCAGGGGATGAAGGTGATGAGGCTGCTCATGGCAGTGATTCATTGCGAAGCATGGATTGCTCAACAGTTATCGAAGTCATAACCATACACATTAGCTCTCCGATTCTGGCAGTAAAGAGTCCATTTTTTTATAAGTTGTTTTCAAATGGTATGAGGGAATCAGAGCAGCGGCATGTAACTCTGCGAATTCATGAATCTGAAGAAGCAGCTCTCATGGAACTTATGAACTTTATGTATAGTAATACTTTGTCCACAAACACTCCTTCTGCTTTATTGGACGTGCTAATGGCTGCCGATAAGTTTGAGGTGGCTTCATGCATGAGGTACTGCAGTAGGTTAATGCTTAGCTTGCCAATGACTTGCGAGTCAGCCTTGCTCTACTTGGACCTTCCATCTAGCATTTCAATGGCCGAGGCTGTTCAACCACTGACTGAAGCAGCAAAGTCATTCCTTGCTGCTCGGTACAAAGACATAACAAGGTTTCATGAAGAGGTAATGAACTTGCCTCTAGCCGGTATTGAAGCTGTCCTGTCAAGTGATGATCTTCAAATTGCTTCAGAGGATGCCGTTTTCGACTTTGTCCTCAGGTGGGCTCGGACCCATTATCCCAAACTAGAGGACCGAAGAGACATTCTAGGCTCACACCTCGGACGACACATCCGTTTCCCCTTCATGACTTGTAGAAAGCTAAAGAAAATCCTAACCTGCAATGACTTTGACCCGGATCTTGGATCAAAAGTTGTTCTAGAAGCTCTATTTTTCAAAGCAGAGGCTCCATATAGGCAAAGGTCTCTTGCTATAGAAGAAGCCAACGTGACCCACCGCCGGTTTGTAGAACGGGCCTACAAGTACCGGCCAGTTAAGGTGGTTGAATTCGAGACGCCACGACAGGAGTGCATTGTCTACCTGGACCTCAAGCGAGAAGAGTGCAGTCAGCTTTTTCCATCGGGCCGGGTTTACTCCCAGGCCTTTCACTTGGGCGAACAGGGCTTCTTCTTGTCAGCCCATTGCAACATGGTCCAACAAAATACCTTCCAATGTTTCGGGTTGTTTTTGGGGATGCAGGAGAAAGGCTCCGTTTCTTTTGCAATTGATTATGAATTTGCAGCTAGGCTGAAACCTAGCGAGGAGTATGAGAGGAAGTATAAAGGAAGCTATACTTTTACCGGAGGCAAGGCTGTTGGGTATAGGAATTTGTTCGGTATTGCTTGGACGGCTTTCATGGCAGACGATAGCGTTTACTTTATTAACGACACCCTTCATTTAAGAGCTGAATTAACTATCAAACAATAA 1647 45.96 MESETSPAGGGRLTGGSAPDPDFSFAFNERNFSDRVLRIEIISDSTENKSDGEGCNSIADWARNRKRRREDNNKKESAVDVVLNCEEQIPNCNMPDTEDGGAYETQDEDADAMIEESPSGDEGDEAAHGSDSLRSMDCSTVIEVITIHISSPILAVKSPFFYKLFSNGMRESEQRHVTLRIHESEEAALMELMNFMYSNTLSTNTPSALLDVLMAADKFEVASCMRYCSRLMLSLPMTCESALLYLDLPSSISMAEAVQPLTEAAKSFLAARYKDITRFHEEVMNLPLAGIEAVLSSDDLQIASEDAVFDFVLRWARTHYPKLEDRRDILGSHLGRHIRFPFMTCRKLKKILTCNDFDPDLGSKVVLEALFFKAEAPYRQRSLAIEEANVTHRRFVERAYKYRPVKVVEFETPRQECIVYLDLKREECSQLFPSGRVYSQAFHLGEQGFFLSAHCNMVQQNTFQCFGLFLGMQEKGSVSFAIDYEFAARLKPSEEYERKYKGSYTFTGGKAVGYRNLFGIAWTAFMADDSVYFINDTLHLRAELTIKQ 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1417629 1421137 + Conep12aG0027300.1 Cone12ag0267 449111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0267 548 Pfam Kelch-like protein 33-like, BTB/POZ domain 164 228 - -
Cone12ag0267 548 SUPERFAMILY POZ domain 137 233 IPR011333 -
Cone12ag0267 548 MobiDBLite consensus disorder prediction 1 26 - -
Cone12ag0267 548 PANTHER OS02G0260700 PROTEIN 18 548 IPR045890 GO:0005634(PANTHER)|GO:0010114(PANTHER)
Cone12ag0267 548 MobiDBLite consensus disorder prediction 60 77 - -
Cone12ag0267 548 Gene3D - 270 373 - -
Cone12ag0267 548 SMART BACK_2 251 353 IPR011705 -
Cone12ag0267 548 MobiDBLite consensus disorder prediction 43 77 - -
Cone12ag0267 548 FunFam BTB/POZ domain-containing protein POB1 270 374 - -
Cone12ag0267 548 SMART BTB_4 136 236 IPR000210 GO:0005515(InterPro)
Cone12ag0267 548 FunFam BTB/POZ domain-containing protein POB1 131 269 - -
Cone12ag0267 548 MobiDBLite consensus disorder prediction 112 132 - -
Cone12ag0267 548 ProSiteProfiles BTB domain profile. 136 205 IPR000210 GO:0005515(InterPro)
Cone12ag0267 548 Gene3D Potassium Channel Kv1.1; Chain A 123 269 IPR011333 -
Cone12ag0267 548 Pfam BTB And C-terminal Kelch 257 351 IPR011705 -
Cone12ag0267 548 CDD BTB_POZ_ZBTB_KLHL-like 137 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0267 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0267 Cone-Chr12:1417629 Cone18ag1042 Cone-Chr18:7667998 9.84E-275 dispersed
Cone12ag0267 Cone-Chr12:1417629 Cone8ag0261 Cone-Chr8:1507694 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0261 Cone12ag0267 . . . . . . . . . . . . . . . . . Cma06g01039 . Car06g00872 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2