Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0274 ATGTTGAGCTCCTTCACTTACTCTCACCCTCTCCTCCGACGGCCTGCTCCCCATCCTCCTCCTCCTCTTCCGGCCACTAGCCCTCCGATTAGGGTTTCCATCCGACCTGAAAAGTCTCCCCTTCCGATTTTCCCTTCTTGTCGGATCTCAACCACTTTCCGGCCATGTAAATTCAAATGGATGATTTCATGCTTTAGGCGCGAGGAATCATCTTCTTCAGAAGCGTCCAATCATGAATTTTCGGAACAATTTTCGCAGGAAAAATTGGGGAAATCTGAAGTAGATAATACGCCAAACAATGTTAAAGGGGATGATTTAACGTCCAAACTTAGTAAGGCTAGAGATGAAGCATACAAGGCAATTGGTACCCGTTGGACCGTCCCATGGACCGCAGAGACTATCGTGCAAGTTATGCTTCTCTGGATAGTTGCTTTCTGGTTCATAGGATCGTGGGTGATTCCATTTGCAGCATATGCAGCCGGTTTTAACCGGGACTCACTCACATTCCGAGGCCAAGCCTTATTCAGCCTAATAACAGACTTAATAGAAGGCTTAGTCGGAATCTCAATCCTTAACCACTGCCTCTCTAGATTCAAACCTCTTCCACCTGATTGGTTTAAATTTACCTTTAAAGGCATGTGGCTTTTTGACATAGCTCTAGGCTGCCTCGTCTTCCCTCTAGTCAACCATCTCTCCCATCTGAATCTCAACCTCCTCCCTCTTGTCCCAAAAGCAACACCTGTCACATTATCCACCGTTGAACAGTCCATCATGGCCCGTGATCCTGTGGCTATGGCTCTTTATGCGGTTGTTGTTTCGGTCTGTGCTCCTGTTTGGGAAGAAATAGTTTTCCGGGGCTTTCTTCTACCTTCTTTGACTAAATATATGCCTGTTTGGTGTGCGATTTTGGTAAGCTCTGTTGCTTTTGCATTAGTGCATTTTAATGTACAGAGAATGTTGCCTCTGGTTTTGCTTGGAGTGGTTATAGGTGTTGTTTTTGCTCGGTCGAGGAATCTTTTGCCTTCTATCCTCCTGCATAGCCTTTGGAATGGGTTCGTGTTTTGGGATTTGACAAAGTAA 1080 45.65 MLSSFTYSHPLLRRPAPHPPPPLPATSPPIRVSIRPEKSPLPIFPSCRISTTFRPCKFKWMISCFRREESSSSEASNHEFSEQFSQEKLGKSEVDNTPNNVKGDDLTSKLSKARDEAYKAIGTRWTVPWTAETIVQVMLLWIVAFWFIGSWVIPFAAYAAGFNRDSLTFRGQALFSLITDLIEGLVGISILNHCLSRFKPLPPDWFKFTFKGMWLFDIALGCLVFPLVNHLSHLNLNLLPLVPKATPVTLSTVEQSIMARDPVAMALYAVVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAILVSSVAFALVHFNVQRMLPLVLLGVVIGVVFARSRNLLPSILLHSLWNGFVFWDLTK 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1476518 1479130 + Conep12aG0028400.1 Cone12ag0274 449118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0274 359 PANTHER CAAX AMINO TERMINAL PROTEASE 64 354 - -
Cone12ag0274 359 MobiDBLite consensus disorder prediction 90 106 - -
Cone12ag0274 359 MobiDBLite consensus disorder prediction 1 34 - -
Cone12ag0274 359 MobiDBLite consensus disorder prediction 13 29 - -
Cone12ag0274 359 MobiDBLite consensus disorder prediction 76 106 - -
Cone12ag0274 359 Pfam Type II CAAX prenyl endopeptidase Rce1-like 265 351 IPR003675 GO:0004222(InterPro)|GO:0016020(InterPro)|GO:0071586(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0274 K07052 - - cit:102608238 437.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0274 Cone-Chr12:1476518 Cone6ag0821 Cone-Chr6:4183029 1.40E-148 dispersed
Cone12ag0274 Cone-Chr12:1476518 Cone8ag0268 Cone-Chr8:1557530 2.42E-36 wgd
Cone12ag0274 Cone-Chr12:1476518 Cone9ag0820 Cone-Chr9:3963510 1.21E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g65 . Blo03g00231 Bda06g00126 . . Bpe07g00089 . . . . . . . . . . Cpe05g00630 . . . . . . . . . . . . . . . Cone12ag0274 . Cone9ag0820 . . . . . . . . . . . . . Cmo02g01113 Cmo15g01113 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005068 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 2 1 1 4 1 2 41