Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0287 ATGAAATGGATGAAGAAGATTTCTTCCTTTCTCCCTAGTGCTGCTGTAAATTCCGACACCCACGAGGAGATTGCTATAAAGAAAATCAGCAATGCATTTGACAACAGAATCGACGCCAAACGGACCTTAAGAGAAATTAAGCTTCTTCTCCATATGAGCCATGAAAATGTTATTGCCATTAAGGACATTATACGACCCCCAAAAAAAGACGCCTTCAATGATGTGTATATTGTCTATGAATTGATGGACACTGATCTTCATCAGATCATTCGTTCGCAACAATCCCTCACGGATGATCATTGTCAGTATTTTTTGTATCAGCTATTAAGGGGGCTAAGGTACGTACACTCTGCAAAGGTCTTACACCGTGATCTTAAGCCAAGCAACCTTTTTCTAAATGGAAATTGTGACCTGAAAATCGGAGACTTTGGTCTGGCAAGGACTACTTCTGAAACTGATTTCATGACGGAGTATGTGGTTACACGTTGGTATCGGGCCCCAGAGTTGCTTCTCAATTGTTCAGAATACACGGCAGCTATTGATGTCTGGTCTGTTGGCTGTATTCTTGGGGAGATAGCGACTCGGGAGCCGTTGTTCCCTGGGAAAGATTATGTTCATCAGCTTAGGCTTATCACCGAGTTACTAGGTTCACCGGATGATGCTAGCCTCGGGTTTCTCAGAAGCGACAATGCTAGAAGATATGTCAAACAACTCCCACAATTCCAGAAGCAGAACTTTTCCTCCAGATTTCCAAACATTTCGCCTGGAGCCCTTGATCTTCTAGAGAAAATGCTCATCTTTGATCCCCACAAACGAATCACAGTAGAGGAAGCACTTTGTCATCCATACTTATCGTCTCTGCATGATATCAATGATGAGCCGGTCTGTTCCTGTCCGTTCAGTTTCGACTTTGAGCATCCGTCTTGTACCGAAGAGCACATTAAAGAACTCATCTGGAGAGAATCGGTCAAGTTCAATCCGGAGCCGACCCATTAG 996 43.57 MKWMKKISSFLPSAAVNSDTHEEIAIKKISNAFDNRIDAKRTLREIKLLLHMSHENVIAIKDIIRPPKKDAFNDVYIVYELMDTDLHQIIRSQQSLTDDHCQYFLYQLLRGLRYVHSAKVLHRDLKPSNLFLNGNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIATREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQFQKQNFSSRFPNISPGALDLLEKMLIFDPHKRITVEEALCHPYLSSLHDINDEPVCSCPFSFDFEHPSCTEEHIKELIWRESVKFNPEPTH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1551932 1554877 + Conep12aG0029900.1 Cone12ag0287 449131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0287 331 ProSitePatterns MAP kinase signature. 33 136 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0287 331 FunFam Mitogen-activated protein kinase 82 311 - -
Cone12ag0287 331 SMART serkin_6 5 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0287 331 Pfam Protein kinase domain 15 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0287 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0287 331 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0287 331 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 320 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone12ag0287 331 FunFam Mitogen-activated protein kinase 5 92 - -
Cone12ag0287 331 SUPERFAMILY Protein kinase-like (PK-like) 15 292 IPR011009 -
Cone12ag0287 331 Gene3D Phosphorylase Kinase; domain 1 13 321 - -
Cone12ag0287 331 Gene3D Transferase(Phosphotransferase) domain 1 82 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0287 Cone-Chr12:1551932 Cone18ag0309 Cone-Chr18:1516153 2.79E-188 dispersed
Cone12ag0287 Cone-Chr12:1551932 Cone14ag0377 Cone-Chr14:1764585 1.97E-207 wgd
Cone12ag0287 Cone-Chr12:1551932 Cone15ag0414 Cone-Chr15:1946029 1.04E-146 wgd
Cone12ag0287 Cone-Chr12:1551932 Cone6ag0803 Cone-Chr6:4083500 3.22E-213 wgd
Cone12ag0287 Cone-Chr12:1551932 Cone8ag0281 Cone-Chr8:1625057 2.20E-227 wgd
Cone12ag0287 Cone-Chr12:1551932 Cone9ag0801 Cone-Chr9:3846444 2.38E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81947 PF04142 Nuc_sug_transp 2.90E-33 CL0184 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0287 K20600 - csv:101214254 592.423