Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0290 ATGGTTACTAACAATAATTTAAGTACTGGGTTTGGCTATTCGGATCATAATAATCCGAGCATCGATCATCAAGCTGGGGAGTTTGGAACCCCGATCCAATACCAATCGGAGATCTTCAACTTAACTACAGGCATGGAGAATATGACGGGGTTTTCGAAGAATCTACACCATCCATCTTCTTCAAAAATGACGATCGACGAATCAACAGCCCAAGATTTCTATAACCATGATCATGATCATAATCAGAATCTAATGGTTGGACCTAATAATTGGCAAGAGAACAGATTCCAATTTGTAGGCGAGGAGGAAGATGATTCTTCTTCTTTAAGATGTGTTTTTCCTTGTGAAGGAAATGAAAGGCCGAGTCAAAGTCTTTCTCTCTCTCTCTCTTCAGCCAATCCTTCTTCTATCGGCTTACAATCTTTCGAGCTCCGGCAAACGCCCTCGACCGATCATCATCAGCCGCATCAACAAGTTTTAACCCGAGAAGGGTTTTTCGAACAACAAAGGCAACTTATTCTTAAAAATACGAAGTACTTAATCCCGGCTCAAGAGCTTCTAAACGAGTTTTGTAGCCTCGGTTTGAAACAAAACAGTTCGCATAAGAACAAGCAACAAATGGATCAATCAGAAGATCATATTAATCCCAGTAGTTCTTCGAGAAAGCAACCGCTCTTCTCGCTTGATTTCATCGAATTGCAGAAACGGAAAACCAAGCTTTACCCAATGCTCGAAGAGCTTGAAAGAAGATACCGACACTATTGCGACCAGATGAAGGTGGTCGTGTCGTTGTTCGAAGCCGCGGTGGGGCTCGGCACAGCGAGGGTTTACACCTCGTTGGCTTCAAAAGCCATGTCAAGACATTTCAAGTGCTTAAAAGATGGGATTGTGAACCAAATTCAAGCTACAAAGAAGGCCACGGGAGAGAAAGACCCAATTGCCCCCGGCGTGAGTCGAGGTGAAACACCTAGGCTTCGGGTTCTTGATCAAGCCTTGAGGCAACAAAGAGCTTTCCAACAAATGACTTTGATGGAGACTCATCCATGGCGGCCTCAACGTGGTCTTCCGAAAAGTTCGGTTTCGATTCTCCGCGCTTGGCTTTTCGAGCACTTCCTTCACCCGTATCCAAGCAATGTTGATAAACACATTTTAGCTCGCCAAACAGGCCTTTCAAGAAGCCAGGTATCAAATTGGTTTATAAACGCGAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACATGGAAGAAGTAAAAGAGCTAGAGCAAGACAACATGATCATAATAACCAACATGACTTCCTCAGATGGAGTACTTTCGGATATCGTCCTGAACGAAAACCCGATCCAAACCCGGCAGGAAGACCAAAAGCCCACCACGGACCAACTCTTAAGAACCGACTCGGAATGCTTCTCTTCCATAATCACCAACAACCGGCCCTACAAAAACATCAGTCAAGATCACTCCAAAACCATCTCCAACAAATTCTATAACTTCCATACCCACCATGATCAGCATTCGAATTTCGGAAATGTCGGAGAGGGTTTCGGGTCAATGGACCTGGACTTCTACTTGGCAGCAGCCGCCACAAGTGGCAGCAGAGGTAGCGGTGGCGGGGTGTCATTGACATTGGGGTTGCAACAACATGGACGGCATGGGGTTAGTTTAGGAGCATTCTCTTCTCCCGTTAACTCTCAAAGCTCATCACTCTTTTATGGAAGAGATCAGATGGACCAGGATTGCCAACAAGTTGTTCAATACTCGCTCTTAGATGGGGATCAGACGGTGCAGAATAATTTTCCGTACAGGAATCTGATGGGGGCCCAGTTACTCCATGACTTGGCCTAA 1851 45.27 MVTNNNLSTGFGYSDHNNPSIDHQAGEFGTPIQYQSEIFNLTTGMENMTGFSKNLHHPSSSKMTIDESTAQDFYNHDHDHNQNLMVGPNNWQENRFQFVGEEEDDSSSLRCVFPCEGNERPSQSLSLSLSSANPSSIGLQSFELRQTPSTDHHQPHQQVLTREGFFEQQRQLILKNTKYLIPAQELLNEFCSLGLKQNSSHKNKQQMDQSEDHINPSSSSRKQPLFSLDFIELQKRKTKLYPMLEELERRYRHYCDQMKVVVSLFEAAVGLGTARVYTSLASKAMSRHFKCLKDGIVNQIQATKKATGEKDPIAPGVSRGETPRLRVLDQALRQQRAFQQMTLMETHPWRPQRGLPKSSVSILRAWLFEHFLHPYPSNVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEEVKELEQDNMIIITNMTSSDGVLSDIVLNENPIQTRQEDQKPTTDQLLRTDSECFSSIITNNRPYKNISQDHSKTISNKFYNFHTHHDQHSNFGNVGEGFGSMDLDFYLAAAATSGSRGSGGGVSLTLGLQQHGRHGVSLGAFSSPVNSQSSSLFYGRDQMDQDCQQVVQYSLLDGDQTVQNNFPYRNLMGAQLLHDLA 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1567141 1570092 - Conep12aG0030200.1 Cone12ag0290 449134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0290 616 CDD homeodomain 349 410 IPR001356 GO:0003677(InterPro)
Cone12ag0290 616 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Cone12ag0290 616 Gene3D - 352 414 - -
Cone12ag0290 616 SMART prehox3 168 298 IPR006563 -
Cone12ag0290 616 Pfam Associated with HOX 173 296 IPR006563 -
Cone12ag0290 616 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 451 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone12ag0290 616 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag0290 616 SMART HOX_1 349 413 IPR001356 GO:0003677(InterPro)
Cone12ag0290 616 FunFam BEL1-like homeodomain protein 4 352 414 - -
Cone12ag0290 616 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677(InterPro)
Cone12ag0290 616 MobiDBLite consensus disorder prediction 201 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0290 Cone-Chr12:1567141 Cone8ag0088 Cone-Chr8:468633 1.19E-81 dispersed
Cone12ag0290 Cone-Chr12:1567141 Cone6ag0798 Cone-Chr6:4056769 1.87E-125 wgd
Cone12ag0290 Cone-Chr12:1567141 Cone8ag0284 Cone-Chr8:1635714 0 wgd
Cone12ag0290 Cone-Chr12:1567141 Cone9ag0798 Cone-Chr9:3829853 4.28E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44430 PF02630 SCO1-SenC 2.00E-38 CL0172 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0290 - - - 0.0