Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0294 ATGGGGCATGGTGAGAAGGGAAGGTCGAGCAAAAGACCCAAATTCGCGGGAAAGGAAGATCATAAGAAATCCATTGTTGATGACGAAGATACTTATTTTGTTGAAGAAGTCGATGACGATGATCGCAACGTGAAAAAGAGGGATTTTACAAAGTTAGAGTTGAAACCTGATCACCTTAATCGACCTTTGTGGGCTTGTGCTGATGGACGGATATTCCTCGAAACCTTCTCCCCTCTCTACAAACAAGCTTATGACTTTCTTATCGCCATTGCTGAGCCAGTTTGCAGGCCCGAGTCTATGCATGAATATAACCTTACACCGCACTCATTATACGCGGCCGTTTCGGTTGGTCTTGAAACAGAAACGATAATTGCTGTATTGAATAAATTGTCAAAGACTAAGCTGCCAAAAGAGATGATTGATTTCATCCATGCTTCTACTGCCAACTATGGCAAAGTGAAGCTTGTGCTGAAAAAGAATCGGTACTTTATAGAATCCCCATTTCCAGAGGTTTTGAAGAAATTACTCAAAGACGAAGTTATAGGTCGAGCTAGGATCATTTCTGAGGGCTCAAATGGAAGTGATGGGTTTACTATTAGCAAGGCATTGGGTGAACTTACCACTGGTCATGGTGGGCTTCTAAATGAAGCAGAAATTGCAGCTGCAGCTGAAGAAAAACAAACTCATGCATTTGAAATTGACCCTTCACAGGTCGAGAATGTAAAGCAACGTTGTTTGCCAAATGCTTTAAATTATCCCATGTTGGAAGAGTACGACTTCAGAAATGATACTGTCAATCCTGATCTTGAAATGGAACTGAAGCCTCAAGCTCAACCTAGACCCTATCAAGAAAAAAGTCTTAGTAAAATGTTTGGGAATGGCAGAGCAAGATCTGGTATTATTGTGCTTCCTTGTGGAGCTGGAAAGTCTCTAGTTGGAGTTTCTGCAGCTTCTCGTATAAGAAAAAGTTGTCTTTGCTTAGCAACAAATGCTGTTTCAGTGGATCAATGGGCTTTTCAGTTTAAGCTTTGGTCAACAATACGAGATGAACAGATCTGTCGATTCACATCTGATAGCAAAGAGAGATTCAGAGGCAATGCTGGGGTGATTGTCACAACTTATAACATGATTGCTTTCAATGGTAAACGGTCAGAAGAATCTGACAAAATCATAGAAGAGATTAGAAATAGAGAGTGGGGGTTGCTTCTCATGGATGAGGTGCATGTGGTTCCTGCTCATATGTTTCGAAAAGTTATCAGCCTGACCAAATCTCATTGCAAGCTTGGACTTACTGCTACTCTTGTGAGAGAGGATGAAAGAATTACAGATTTGAACTTCCTTATTGGTCCCAAATTATACGAGGCTAATTGGTTAGATCTCGTGAAAGGTGGGTTTATTGCCAATGTTCAGTGTGCTGAAGTTTGGTGTCCGATGACGAAGGAATTTTTTGCCGAATACCTAAAGAAAGAAAACTCCAAGAAAAAACAGGCACTTTATGTAATGAACCCAAATAAGTTCCGAGCATGCGAGTTTCTCATACGGTTCCATGAACAGCAACGTGGTGATAAGATAATCGTCTTTGCTGATAATCTTTTTGCCCTTACGGAATATGCAATGAAGCTTCGGAAACCTATGATCTATGGTGCTACCAGTCATGCTGAGAGAACAAAGATTCTTGATGCTTTTAAAACTAGCCGCGATTTGAATACAGTTTTCCTCTCAAAGGTGGGTGATAACTCTATAGATATTCCGGAGGCGAATGTGATTATCCAAATATCATCACATGCGGGTTCAAGACGACAAGAGGCCCAACGTTTGGGTCGTATTCTTCGAGCGAAGGGTAAACATCAGGACAGAATGGCAGGAGGAAAAGAGGAGTACAATGCATTTTTCTATTCCCTTGTCTCTACAGATACACAGGAAATGTACTACTCAACTAAAAGACAGCAGTTTTTGATTGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCGCCCGATTCTGGACCTGATTTGAGCTACTACAAACTTCATGACCAGCTGGCACTTCTTGGAAAGGTCTTAAGTGCTGGTGATGATCTTGTGGGACTAGAACAACTGGAAGAAGATGCAGATGACATAGCTGTTTACAAGGCCCACCGTTCTGCAGGGTCCATGAGCGCAATGTCTGGAGCAAAGGGAATGGTCTACATGGAATACAGTACGGGAAGAAAACTTGCCGGACAGGGCCAGATTAAGAGTAAGCCAAAGGATCCAGCAAAGCGACATCACCTTTTTAAAAAGCGTTTCACTTGA 2301 41.72 MGHGEKGRSSKRPKFAGKEDHKKSIVDDEDTYFVEEVDDDDRNVKKRDFTKLELKPDHLNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKKLLKDEVIGRARIISEGSNGSDGFTISKALGELTTGHGGLLNEAEIAAAAEEKQTHAFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLEMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVIVTTYNMIAFNGKRSEESDKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHAERTKILDAFKTSRDLNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDSGPDLSYYKLHDQLALLGKVLSAGDDLVGLEQLEEDADDIAVYKAHRSAGSMSAMSGAKGMVYMEYSTGRKLAGQGQIKSKPKDPAKRHHLFKKRFT 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1596705 1602543 - Conep12aG0030600.1 Cone12ag0294 449138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0294 766 Pfam ERCC3/RAD25/XPB C-terminal helicase 460 706 IPR032438 -
Cone12ag0294 766 PANTHER RAD25/XP-B DNA REPAIR HELICASE 44 735 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
Cone12ag0294 766 Gene3D - 461 698 IPR027417 -
Cone12ag0294 766 Gene3D - 268 460 IPR027417 -
Cone12ag0294 766 MobiDBLite consensus disorder prediction 744 766 - -
Cone12ag0294 766 FunFam Putative DNA repair helicase rad25 461 703 - -
Cone12ag0294 766 NCBIfam DNA repair helicase rad25 222 763 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
Cone12ag0294 766 Pfam Helicase conserved C-terminal domain 63 185 IPR032830 -
Cone12ag0294 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 673 IPR001650 -
Cone12ag0294 766 SMART ultradead3 275 456 IPR014001 -
Cone12ag0294 766 FunFam Probable DNA repair helicase RAD25 269 460 - -
Cone12ag0294 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 454 IPR027417 -
Cone12ag0294 766 SMART helicmild6 535 613 IPR001650 -
Cone12ag0294 766 CDD SF2_C_XPB 471 635 - -
Cone12ag0294 766 Pfam Type III restriction enzyme, res subunit 278 435 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 464 486 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 398 418 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 61 81 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 502 517 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 625 648 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 716 735 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 569 587 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 260 286 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 147 166 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 291 313 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 588 613 - -
Cone12ag0294 766 PRINTS Xeroderma pigmentosum group B protein signature 522 544 - -
Cone12ag0294 766 MobiDBLite consensus disorder prediction 1 23 - -
Cone12ag0294 766 MobiDBLite consensus disorder prediction 752 766 - -
Cone12ag0294 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 452 IPR014001 -
Cone12ag0294 766 CDD DEXHc_XPB 271 440 - -
Cone12ag0294 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 710 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0294 K10843 - - csv:101215293 1344.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0294 Cone-Chr12:1596705 Cone8ag0288 Cone-Chr8:1660045 1.17E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30