Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0298 ATGGCTCGATTGGTTCTTCCCTGCAAGAGTGCCGGATTTGTGAGAACAAGTCTTGTCGGTTTCATCTCCTCTGCTCCTGCTCGTGCTAAATACCCTAGCAGGTCAGTTGGGAGTTTAGTGAAAAGTAGTAATAGATACAGCTGTTTGCTTACTTCACAGAGGGCCGGACAATCTAGTGGAAGGCTGATCTGTTCAGTTGCTACTGTACCAAAACAATTTGAAGAATCGAAAATGGATGCACCAAAAGAAGTATTCTTGAAGGACTACAAGAAGCCTGATTACTACTTTGACACGCTCGATTTGAAATTTGAGCTGGGTGAGGAAAAAACAATTGTCAGTTCAAGAATAACTGTCCAAAGAGAAGGTTCTCCTTCTCCACTTGTTTTGGATGGAGTAGATCTCAAGTTGATTTCAGTTAAGGTCAACTCTAATGAACTCAAGGAGGAGGATTATCGAGTGGATGCATGCCATCTTACAATTTTATCACCTCCAACTGGTAGTTTCGTGTTGGAAATTGTTACGGAGATATGCCCTCAAAAGAACACATCCTTGGAGGGGCTATATAAGTCATCTGGTAATTTCTGCACTCAATGTGAAGCTGAGGGATTCCGTAAAATTACATATTATCAGGACCGTCCTGATATAATGGCCAAATACACTTGCCGAATAGAAGCTGACAAGTCATTATACCCAGTTCTCTTGTCTAATGGAAATCTTCTCGAGCAGGGTGATATGGAGGGTGCGAAACATTATGCCCTTTGGGTGGATCCATTCAAGAAACCATGCTACTTGTTTGCTTTAGTAGCAGGACAGTTGGCGAGCAGAGACGATGAGTTTATAACCCGCTCTGGTAGAAAGGTCTCTCTAAGGATCTGGACACCTGCTGAAGACCTACCCAAGACAGCTCATGCCATGTATTCACTAAAGGCAGCTATGAAATGGGATGAGGATGTCTTTGGTCTAGAGTACGATCTGGATCTTTTCAATATTGTAGCTGTTCCGGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCGAAACTTGTGTTGGCATCTCCAGAAACAGCTTCAGATGGGGATTACGCTGCAATATTAGGAGTTATTGGCCACGAGTATTTCCACAACTGGACTGGAAACAGAGTAACATGTCGTGACTGGTTCCAGCTTAGCTTGAAAGAAGGCCTTACGGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGCCGTACTGTAAAGCGAATTGCAGATGTTTCCAAACTTAGGAATTATCAGTTTCCACAGGATGCCGGTCCAATTGCTCATCCGGTGCGACCACATTCGTATATTAAGGTTAGAGATTACTTATTCTTGGCTGAGGTGACTCGGGATAGGTTTCTCATGTTATTGTATTTGGGTTCTTTATGTGATCATGCTGGCTTTGATTTTGACCCGGTTCCTTCATCATATTCAAACTGCAGTGACGATCCTAATTTTGCACGGCATGAATTATACTTGCAGGTGTATGAAAAGGGAGCTGAAGTTGTCCGGATGTATAAAACTTTGTTGGGAAGTCAAGGCTTCCGGAAAGGCATGGATCTATACTTCAAGAGACATGATGGTCAGGCTGTAACCTGTGAAGATTTTTATGCAGCAATGCGAGATGCAAATGATGCAGATTTTGCTAACTTCTTACTATGGTACTCACAAGCTGGAACTCCTCTTGTCAAAGTTACATCATCATACAACTCTGAAGCTCACACATTCTCCTTAAAATTTAGTCAAGATGTACCATCAACTCCTGGTCAGCCAGTTAAAGAGCCCATGTTTATACCTGTCACAGTAGGTCTTCTGGATTCTACTGGAAAGGACTTGGCCCTCACAGGGGTTTATCAGGATGGAAAGTTGCAGTCAGTTGCAAGCAATGAACAACCGGTCTCCTCTACAGTTCTTCGTGTGACCAAGAAAGAGGAAGAGTTTACCTTTGTTGATATACCTGAAAGGCCAGTCCCATCTTTATTACGGGGTTATAGTGCTCCTATCCGTCTTGAATCTGATTTGAACAACAGTGATCTATCTTTCCTTCTTGCCCATGATTCAGACGAGTTCAACCGCTGGGAAGCTGGACAAATACTGGCTCGAAAGCTGATGCTCAGCTTGGTGGCTGATTTCCAACAAAATAAACTATTAGTCCTGAATTCAGAGTTCTTGCATGGACTGAGAAGCATACTTTCTGACACGAACTTGGATAAAGAATTCATTGCAAAGGCAATAACTCTACCAGGTGAAGGGGAAATAATGGACATGATGGAAGTTGCAGATCCTGATGCAGTACATTCTGTTCGCAACTTCATTAGGAAGCAGATCGCCAGTGAGCTCAAAACCGAGCTTCTAGCCACAGTCAAAAACAATAGGAGCTCGGGACCATATACATTTAACCACGCTGAAATGTCCAGACGCACTCTGAAGAATACTGCTCTGACATATCTTGCATTGCTCCAAGATGCAGAGCTCACTGAACTTGCTCTACATGAGTATAAAACTGCCACAAATATGACCGAACAATTTGCAGCTTTGGCAGCCATTGCTCAGAACCCTGGTAAAGCCCGTGACGATGTTTTGGCTGACTTCTATAACAAGTGGCAGCACAACTTTTTAGTTGTGAATAAGTGGTTTCACCTTCAAGCGTTTTCTGATATTCCTGGAAATGTTGAGAATGTTCGGAAGCTCTTAAACCACCCAGCATTTGACTTGCGTAATCCAAACAAGGTCTACTCCCTCATCGGAGGTTTCTGTGGGTGCCCCATGAATTTCCATGCAAAGGATGGGTCGGGCTACAAATTCTTGGGAGAGATTGTTTTGCAGCTAGACAAAATAAATCCTCAGGTGGCTTCTCGAATGGTTTCTGCCTTCTCAAGATGGAGACGATATGATGAAACCCGACAAAACCATTCCAAGGCACATCTCGAGAAGATCATGTCAGAGAACGGACTGTCTGAAAATGTCTTTGAGATTGCATCGAAAAGCTTGGCCGCTTAG 3033 43.13 MARLVLPCKSAGFVRTSLVGFISSAPARAKYPSRSVGSLVKSSNRYSCLLTSQRAGQSSGRLICSVATVPKQFEESKMDAPKEVFLKDYKKPDYYFDTLDLKFELGEEKTIVSSRITVQREGSPSPLVLDGVDLKLISVKVNSNELKEEDYRVDACHLTILSPPTGSFVLEIVTEICPQKNTSLEGLYKSSGNFCTQCEAEGFRKITYYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLLEQGDMEGAKHYALWVDPFKKPCYLFALVAGQLASRDDEFITRSGRKVSLRIWTPAEDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDGDYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRNYQFPQDAGPIAHPVRPHSYIKVRDYLFLAEVTRDRFLMLLYLGSLCDHAGFDFDPVPSSYSNCSDDPNFARHELYLQVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYAAMRDANDADFANFLLWYSQAGTPLVKVTSSYNSEAHTFSLKFSQDVPSTPGQPVKEPMFIPVTVGLLDSTGKDLALTGVYQDGKLQSVASNEQPVSSTVLRVTKKEEEFTFVDIPERPVPSLLRGYSAPIRLESDLNNSDLSFLLAHDSDEFNRWEAGQILARKLMLSLVADFQQNKLLVLNSEFLHGLRSILSDTNLDKEFIAKAITLPGEGEIMDMMEVADPDAVHSVRNFIRKQIASELKTELLATVKNNRSSGPYTFNHAEMSRRTLKNTALTYLALLQDAELTELALHEYKTATNMTEQFAALAAIAQNPGKARDDVLADFYNKWQHNFLVVNKWFHLQAFSDIPGNVENVRKLLNHPAFDLRNPNKVYSLIGGFCGCPMNFHAKDGSGYKFLGEIVLQLDKINPQVASRMVSAFSRWRRYDETRQNHSKAHLEKIMSENGLSENVFEIASKSLAA 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1625606 1632705 + Conep12aG0031100.1 Cone12ag0298 449142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0298 1010 Gene3D Neutral Protease Domain 2 358 569 IPR027268 -
Cone12ag0298 1010 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 492 576 - -
Cone12ag0298 1010 PRINTS Membrane alanyl dipeptidase (M1) family signature 254 269 IPR001930 GO:0006508(InterPro)
Cone12ag0298 1010 PRINTS Membrane alanyl dipeptidase (M1) family signature 204 219 IPR001930 GO:0006508(InterPro)
Cone12ag0298 1010 PRINTS Membrane alanyl dipeptidase (M1) family signature 372 387 IPR001930 GO:0006508(InterPro)
Cone12ag0298 1010 PRINTS Membrane alanyl dipeptidase (M1) family signature 391 403 IPR001930 GO:0006508(InterPro)
Cone12ag0298 1010 PRINTS Membrane alanyl dipeptidase (M1) family signature 336 346 IPR001930 GO:0006508(InterPro)
Cone12ag0298 1010 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 84 270 IPR042097 -
Cone12ag0298 1010 FunFam Aminopeptidase N 570 684 - -
Cone12ag0298 1010 Pfam Peptidase family M1 domain 505 562 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cone12ag0298 1010 Pfam Peptidase family M1 domain 305 443 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cone12ag0298 1010 Pfam Domain of unknown function (DUF3458) Ig-like fold 570 683 IPR035414 -
Cone12ag0298 1010 Gene3D - 686 1009 IPR037144 -
Cone12ag0298 1010 Gene3D - 570 683 IPR038438 -
Cone12ag0298 1010 Gene3D - 274 357 - -
Cone12ag0298 1010 Gene3D tricorn interacting facor f3 domain 91 272 IPR042097 -
Cone12ag0298 1010 CDD M1_APN 88 567 - -
Cone12ag0298 1010 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 282 450 - -
Cone12ag0298 1010 Pfam Peptidase M1 N-terminal domain 92 264 IPR045357 -
Cone12ag0298 1010 PANTHER PUROMYCIN-SENSITIVE AMINOPEPTIDASE 76 1010 IPR012779 GO:0008270(InterPro)|GO:0009507(PANTHER)
Cone12ag0298 1010 FunFam Puromycin-sensitive aminopeptidase 685 1009 - -
Cone12ag0298 1010 Pfam Domain of unknown function (DUF3458_C) ARM repeats 688 1009 IPR024601 -
Cone12ag0298 1010 FunFam Putative aminopeptidase N 274 357 - -
Cone12ag0298 1010 FunFam Aminopeptidase N 91 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0298 K01256 - - vvi:100263283 1537.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0298 Cone-Chr12:1625606 Cone4ag1679 Cone-Chr4:12548824 3.94E-17 dispersed
Cone8ag0292 Cone-Chr8:1697262 Cone12ag0298 Cone-Chr12:1625606 0 transposed
Cone12ag0298 Cone-Chr12:1625606 Cone8ag0291 Cone-Chr8:1693470 5.40E-306 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42