Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0305 ATGGCTTTCACCTTCACCTCTCTTTCACTTCCTTCATTTCCATCTCCTCATCCGAAATTTCTCTCTCCTAAACCTCGAATTCAGACTAGCCTCTTTCTCGTATCTCGGACTCGTCGACCTCCACCTCCTTCCGCAATTGGACCGGACGGTAAGTTCTACCCTGACCCGGCAGACGATGACCCTCCTGAAGCTCCGGAAGATTCCGGACACGGAGTGTCCAAGTTTCAGCAAATTTATCGCCAAGCTGCTCGAGCTCGGAAGCTCCAAGAGGAGGATTACAAGAAGCACCAGTCCACCTTCCTCGCCGCCATTGTTGACGTAGAAGACGCTCCGGATAATCCAGACTCTTTATATTCAGAAAACTCCGGCGACGATTTGTTCAGCGAAATTGACAAAGCTATCGCGTTAAAGCGCAAGGAGTTCGTAAAACAGGGCCTTCTTAAACCGAACCCTAAAAAGGAGAAGCCAGCAAAGGAAAACGTAGAAGAAGGAATCGAAGAGTTAGAGCCTGAAGAGGTCGTTGATTTAGAGGAGATTAGCGAGCTTCAGGGCCTTACAGTAATTTCCGAGGACGAGGAAGGTGAAGAAGAAGACAAATCGGAGAATTTGGACGAGGAGGTGAGTGAATTGGAAAATCAAAACAGCACTTTATCGTCTTCATCTTTAAACTCCTCATTTGATTTAGATTTTGATAGCTATGGAAAAGTTAAACCTCGAATTATAGAACCTAAGTTCAAAATCACTTTAGCCGAGCTTTTAGATGAGAGCAAAGTTGTTCCGATTTCTGTTTACGGTGATCTAGAGGTCGAAATTTCAGGAATCCAGCACGACTCTAGAGTGGTTAATTCCGGAGACTTATTTGTATGTTGTGTTGGAAGAAAAACAGATGGGCATTTATATTTGACAGAAGCTGATAAGAGAGGAGCCATAGCTGTTGTAGCTAGTAAAGAGATAGATATAGAGGAAACTCTAGGGTGTAAAGCTTTAGTTATTGTGGAAGATACCAATTTGGTTCTTCCTGCCTTAGCTGCTGCTTTCTATAGATACCCATCAAAGAATATGGCCGTTATTGGGATAACTGGAACAAATGGGAAAACTACAACAGCTTATTTGATAAAAGGAATGTATGAAGCTATGGGAACAAGAACTGGAATGTTAAGTTCCGTAGCATATTATATTCATGGGGATAATAAATTGGAGTCGCCAAACACGACCCCAGATGCTGTTTTGGTTCAAAATCTAATGGCTAAGATGCTCCATAATGGGACGGAGGCGGTTGTAATGGAGGCTTCATCTCACGGACTGGCACAGGGGCGGTGCAATGAGGTCGATTTTGATATAGCAGTTTTCACAAACTTGACTAGGGATCATTTGGATTTCCACGAGATCGACGAAGAGTATAGAGATGCTAAGTTGAAGCTTTTTTCGAGGATGGTGGACCCTGAGCGGCATAGAAAGGTTGTTAATATTGATGACCCAAATGCTCTGTTTTTCATCGAGCAAGGGAACTTAGATGTGCCTCTTGTGACATATGCTATGGAGAATAAAGAAGCAGATGTTCACCCATTGAAGTTTGAGCTTTCTTTGTTTGAGACTCAGGTTTTGGTTAATACGCCTCATGGGATTTTGGAGATATCTTCGGGATTGCTCGGGAGGCATAATATTTACAATATTCTTGCAGCAGTGGCGGTCGGGATTGCAGTTGGAGCGCCTTTGGAGGATATTGTTAGAGGGATTGAAGAGGTTGATGCGGTTCCGGGGAGGTGTGAGTTGATAGACGAGGAACAAGCTTTTGGTGTGATTGTGGACTATGCTCATACTCCTGATGCCTTGTCTAGATTGCTTGATTCTGTAAGGGAGCTTGGGGCAGGGAGAATTATCACTGTTTTTGGCTGTGCTGGAGAGAGTGATAGAGGGAAAAGACCCATGATGACCAAAATTGCAACAGATAAAAGTGATGTTACACTTCTGACCTCAGACAATCCAAAGAACGAAGATCCATTGGACATTTTGGATGATATGTTGGCTGGAGTGGGATGGACAATGCAAGATTATTTAAAACATGGAGAGAATGATTACTATCCGCCTCTTCCAAATGGTCATAGGCTTTTCCTGCATGATATAAGGCGAGTAGCAGTTCGGGCTGCTGTTGCCATGGGAGAGGAAGGTGATATGGTTGTGGTTGCTGGCAAAGGTCATGAAACATATCAGATAGAAGGTGAGAAAAAAGAGTTCTTTGATGATCGGGAAGAGTGCCGGGAAGCATTGCAATATGTCGATGAACTCCACCAAGCTGGAATAGACACAAGTGAATTTCCATGGCGGTTACCAGAGAGTCACTGA 2343 43.83 MAFTFTSLSLPSFPSPHPKFLSPKPRIQTSLFLVSRTRRPPPPSAIGPDGKFYPDPADDDPPEAPEDSGHGVSKFQQIYRQAARARKLQEEDYKKHQSTFLAAIVDVEDAPDNPDSLYSENSGDDLFSEIDKAIALKRKEFVKQGLLKPNPKKEKPAKENVEEGIEELEPEEVVDLEEISELQGLTVISEDEEGEEEDKSENLDEEVSELENQNSTLSSSSLNSSFDLDFDSYGKVKPRIIEPKFKITLAELLDESKVVPISVYGDLEVEISGIQHDSRVVNSGDLFVCCVGRKTDGHLYLTEADKRGAIAVVASKEIDIEETLGCKALVIVEDTNLVLPALAAAFYRYPSKNMAVIGITGTNGKTTTAYLIKGMYEAMGTRTGMLSSVAYYIHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAVVMEASSHGLAQGRCNEVDFDIAVFTNLTRDHLDFHEIDEEYRDAKLKLFSRMVDPERHRKVVNIDDPNALFFIEQGNLDVPLVTYAMENKEADVHPLKFELSLFETQVLVNTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELGAGRIITVFGCAGESDRGKRPMMTKIATDKSDVTLLTSDNPKNEDPLDILDDMLAGVGWTMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDMVVVAGKGHETYQIEGEKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1662642 1666787 - Conep12aG0031800.1 Cone12ag0305 449149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0305 780 Pfam Mur ligase middle domain 359 564 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Cone12ag0305 780 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 269 757 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Cone12ag0305 780 Pfam Mur ligase family, catalytic domain 270 347 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone12ag0305 780 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 247 756 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Cone12ag0305 780 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 585 757 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone12ag0305 780 Coils Coil 193 220 - -
Cone12ag0305 780 PANTHER MUR LIGASE FAMILY MEMBER 235 763 - -
Cone12ag0305 780 Gene3D - 248 348 - -
Cone12ag0305 780 MobiDBLite consensus disorder prediction 1 73 - -
Cone12ag0305 780 SUPERFAMILY MurE/MurF N-terminal domain 252 350 IPR035911 -
Cone12ag0305 780 SUPERFAMILY MurD-like peptide ligases, catalytic domain 350 582 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cone12ag0305 780 MobiDBLite consensus disorder prediction 188 208 - -
Cone12ag0305 780 MobiDBLite consensus disorder prediction 53 67 - -
Cone12ag0305 780 Gene3D - 590 767 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone12ag0305 780 MobiDBLite consensus disorder prediction 184 221 - -
Cone12ag0305 780 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 590 763 - -
Cone12ag0305 780 Pfam Mur ligase, glutamate ligase domain 587 732 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Cone12ag0305 780 Gene3D - 350 588 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0305 Cone-Chr12:1662642 Cone8ag0299 Cone-Chr8:1728235 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37