Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0307 | ATGAGCATCCATTTGAAGCTACATCCGGAAGTTATGATTGAAGGTTACCAAAAGTCTGCTCTAGTGGAATGGTTAAATGGCATGCTTCCCCATTTGAGTTTGCCATTGGAAGCTTCAGATGAAGAACTCAGGGCGTGCTTGACAGATGGAACTATTTTATGCAGCATTTTGAACAAACTATGCCCTTCTGCAATTGAAATGGGAGGTGATTATGGGCCTGGTATTGCAAATGTTGAAAGATTTTTGACAGTGTTGGATGAACTTGGATTGCCTGGCTTTGAACCATCAGACCTTGAGCAGGGATCTATGGTGCCAGTTCTACAGTGCCTTAGTACACTTAGAATATCTTTTGATTTAAGTGTCGGACAAGTGAACACTCAAAATCATTCAAGGAAGAGATGGGATCTATCTGAGATGGGATCATTAGAGGGGAGCGATCTTTCACAAGATCCATTAGCTGCCTTAATAAATCTAGTTCGACGAGAGAATAACGAGGGGCTACAGTTGAAGGAAGGTTACCACGCAGAGCTTTCTAATGCAAATATATTGGAATTGATGAAATCGAGAATTTTCGATAATGCTTCTCTTCATTCTCTTTTCAGTATAGTGAATGGAATTCTAGACGATAGCATCGAAAGAAGAAACGGGGCCGTGTCTCATCATGTGGCATATCTTTTGAGAAAAGTTTTGCAAGTAATTGAGTGGCAAATTATCATGCAAGCAGGAAACATGAAAACTCAATTCAATATTTTTAAGGCTCGTGAAGAGAGATATCAGTTGAAAATAAGAGCACTTGAAACCCTTGCAACTGGAACCACAGAAGAATATGAGGTTATTATGAATCAGCTTCAGAATATTAAGATTGAGAAGTTCAAAATAGAGGACAAGAAAAAACACGAGGAGCAGGATTTGATGATTCTAAAGAAACACATGGATCAAAGTGATATTGAGATTTTGGCGTTAAAGGAGGAGTTAGAAATGACGAAAAGGGCCCATGAAAATCGCTGCTTGCAGTTAGAAGCAAATTCTTGGGAAGCTAAAGTCGAGTTGGGGAAGAAAGTGAATGAACTTCAGTCTCTTTTAACAGATTCAAAGAAGAAAGTGAAAGAACTTGAGACAATGTCTGAATCTGAATCACAGAGATGGAAATCGAAAGAGTGCATATACAAAAATTTTGTAGACCATCTATGTAAAGCTTTACAGGACATAAGGGCAGCTTCTGAGACAACCAAGCATGCGATCTTAAAAACAAAAAGAAGTTACTCAGAGGAATTCAATTACATGGGAATGAAGCTTAGAGGATTAACAGATGCCGCTAAGAATTACCATGCTGTACTGTTAGAGAATCGACGATTGTACAATGAGGTTCAAGATTTAAAAGGGAACATTAGAGTGTACTGCCGAATAAGGCCATTTCTTCCCGGGCAAAGTAAGAATCAAACTACAATAGAATATGTAGGTGAAAATGGTGAATTAGTGATTAGCAATCCTTCTAAACAAGGAAAAGATAGTCGTAAGGTTTTCAAGTTCAATAAAGTTTTTGGTCCAGAGACTTCTCAAGAGCAAGTGTTTTTAGACACTCAACCATTGATTCGATCAGTTCTTGATGGGTATAATGTATGCATATTTGCATATGGTCAAACTGGCTCTGGAAAGACATACACAATGGTTGGTCCTAGTTTATCATCCCAGGAGGACTGGGGGGTCAATTATCGAGCACTACATGATCTTTTTGAAATTTCCGAAACCAGGAAGAGCTCCATTGCATATGAAGTTGGAGTTCAAATGGTTGAGATTTACAATGAACAAGTTCGTGATCTTCTCTCAAGTAACGGCCCTCAGAAAAGACTTGGGATTTGGAGTACCACCCAACCAAATGGATTGACTGTCCCTGAAGCAAGCATGTATCCAGTCAAATCTACTGCTGATGTGCTTGAGTTAATGATTACCGGGTTAAATAACCGGGCAGTAGGTTCTACAGCCCTAAATGAAAGAAGCAGCAGATCTCACAGTGTGCTCTCAGTTCATGTTCAGGGGGCAGACTTAGACAGTGGTGGTGTTTTGCGTGGAAGCCTTCACTTAGTCGATCTTGCTGGTAGTGAGAGAGTGGAGCGCTCTGAGGCAACTGGAGATAGGCTTAAAGAGGCCCAACATATAAACAAATCACTGTCAGCTCTTGGAGATGTCATATATTCACTTTCACAAAAAAGTTCACATGTCCCATATAGAAATAGCAAACTAACTCAAGTCCTTCAGAGTTCTTTAGGTGGTCAAGCAAAAACACTCATGTTTGTGCAGCTTAATCCTGACGTGCAATCCTATTCTGAAACTATAAGCACCTTAAAGTTTGCAGAAAGGGTTTCTGGAGTTGAACTAGGTGCTGCAAGGAGCAACAAAGAGGGAAGATATGTTCGGGAACTTAAGGAACAGGTAGCAGCTCTTAAGGATGTAATAACAAACAAAGACGAGGAAATAGAACGGCTACAGCTGAAGGCCAATTCCAAGGGCACAACACGTGGTATGTGCTCTCTTAGATACGGGTCTTCTTCACCAAGACGAAATACTGTAGCAAATTTAAGCCCAAGTCTCTCAGGTGGGAAAAGGCTGGAACTTATTGGTAGATCAGCTTCAGACGTAGATAACTTCTCTGAGCAAGGCGATAAGAATTCTGAAGCCGGTTCACTTCGCTCGGTTGATGTTAGACATAACAAGAGCTTCACTCCTTGCTCAAAACCTCATGTTGAAGAAGATTTCAGCCCAGGAAATGATGATGTTGAGCTCTTAGGGTTTGGGAATGGAGATTCTGATGAGAGATTAAGTGATATATCAGATAGTGGTCTGTCAATGGGGACGGAAACTGAAGGGTCGATATGTAGTGTTGTTGAGTATACTCTATTTCCAGAAGTTGCAAAAATAGATAGTAATAACAATCTCGAGAGCAAATTGGTTGAAGTTTCACAAGCTCAGTGTTCCCGTGTTGAGAAGACGCTATCTAAGAACACATCTGTTCCCGATTCTGACAAAACAAATTTAACATTGAAGTTTCCGGGGGCCCCATCAAAGCTGGAGCAATCAAAATCGTTGAGATTGTCAATGATCAATAAAAGCTTAACAAAAGTTCCATCAAGTGCCCGGAAATCTAAAATCGGCAGCTCCTCAATGATGAAACCGAGCAAGCGATGGCAGTAA | 3189 | 40.45 | MSIHLKLHPEVMIEGYQKSALVEWLNGMLPHLSLPLEASDEELRACLTDGTILCSILNKLCPSAIEMGGDYGPGIANVERFLTVLDELGLPGFEPSDLEQGSMVPVLQCLSTLRISFDLSVGQVNTQNHSRKRWDLSEMGSLEGSDLSQDPLAALINLVRRENNEGLQLKEGYHAELSNANILELMKSRIFDNASLHSLFSIVNGILDDSIERRNGAVSHHVAYLLRKVLQVIEWQIIMQAGNMKTQFNIFKAREERYQLKIRALETLATGTTEEYEVIMNQLQNIKIEKFKIEDKKKHEEQDLMILKKHMDQSDIEILALKEELEMTKRAHENRCLQLEANSWEAKVELGKKVNELQSLLTDSKKKVKELETMSESESQRWKSKECIYKNFVDHLCKALQDIRAASETTKHAILKTKRSYSEEFNYMGMKLRGLTDAAKNYHAVLLENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKNQTTIEYVGENGELVISNPSKQGKDSRKVFKFNKVFGPETSQEQVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMVGPSLSSQEDWGVNYRALHDLFEISETRKSSIAYEVGVQMVEIYNEQVRDLLSSNGPQKRLGIWSTTQPNGLTVPEASMYPVKSTADVLELMITGLNNRAVGSTALNERSSRSHSVLSVHVQGADLDSGGVLRGSLHLVDLAGSERVERSEATGDRLKEAQHINKSLSALGDVIYSLSQKSSHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVQSYSETISTLKFAERVSGVELGAARSNKEGRYVRELKEQVAALKDVITNKDEEIERLQLKANSKGTTRGMCSLRYGSSSPRRNTVANLSPSLSGGKRLELIGRSASDVDNFSEQGDKNSEAGSLRSVDVRHNKSFTPCSKPHVEEDFSPGNDDVELLGFGNGDSDERLSDISDSGLSMGTETEGSICSVVEYTLFPEVAKIDSNNNLESKLVEVSQAQCSRVEKTLSKNTSVPDSDKTNLTLKFPGAPSKLEQSKSLRLSMINKSLTKVPSSARKSKIGSSSMMKPSKRWQ | 1062 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1672115 | 1679184 | + | Conep12aG0032000.1 | Cone12ag0307 | 449151 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0307 | 1062 | SMART | ch_5 | 17 | 113 | IPR001715 | GO:0005515(InterPro) | |
| Cone12ag0307 | 1062 | PRINTS | Kinesin heavy chain signature | 660 | 677 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | PRINTS | Kinesin heavy chain signature | 537 | 558 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | PRINTS | Kinesin heavy chain signature | 691 | 709 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | PRINTS | Kinesin heavy chain signature | 740 | 761 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | SMART | kinesin_4 | 460 | 798 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 18 | 1027 | IPR027640 | GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER) | |
| Cone12ag0307 | 1062 | FunFam | p-loop containing nucleoside triphosphate hydrolases superfamily protein | 404 | 792 | - | - | |
| Cone12ag0307 | 1062 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 462 | 829 | IPR027417 | - | |
| Cone12ag0307 | 1062 | Pfam | Calponin homology (CH) domain | 17 | 113 | IPR001715 | GO:0005515(InterPro) | |
| Cone12ag0307 | 1062 | Coils | Coil | 311 | 342 | - | - | |
| Cone12ag0307 | 1062 | Pfam | Kinesin motor domain | 468 | 788 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | MobiDBLite | consensus disorder prediction | 1037 | 1062 | - | - | |
| Cone12ag0307 | 1062 | SUPERFAMILY | Calponin-homology domain, CH-domain | 20 | 114 | IPR036872 | - | |
| Cone12ag0307 | 1062 | Coils | Coil | 354 | 374 | - | - | |
| Cone12ag0307 | 1062 | Gene3D | - | 14 | 117 | IPR036872 | - | |
| Cone12ag0307 | 1062 | ProSiteProfiles | Calponin homology (CH) domain profile. | 15 | 118 | IPR001715 | GO:0005515(InterPro) | |
| Cone12ag0307 | 1062 | Gene3D | Kinesin motor domain | 404 | 792 | IPR036961 | - | |
| Cone12ag0307 | 1062 | ProSiteProfiles | Kinesin motor domain profile. | 462 | 790 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Cone12ag0307 | 1062 | ProSitePatterns | Kinesin motor domain signature. | 690 | 701 | IPR019821 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro) | |
| Cone12ag0307 | 1062 | Coils | Coil | 804 | 831 | - | - | |
| Cone12ag0307 | 1062 | MobiDBLite | consensus disorder prediction | 996 | 1018 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0307 | K27887 | - | - | vvi:100256435 | 1252.27 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0307 | Cone-Chr12:1672115 | Cone13ag0285 | Cone-Chr13:2125706 | 2.94E-255 | dispersed | |
| Cone1ag1166 | Cone-Chr1:55753201 | Cone12ag0307 | Cone-Chr12:1672115 | 2.94E-25 | wgd | |
| Cone12ag0307 | Cone-Chr12:1672115 | Cone8ag0301 | Cone-Chr8:1741996 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi2g320 | Blo02g01110 | Blo03g00212 | Bda06g00112 | Bda08g00516 | Bpe05g00646 | Bpe07g00107 | . | Bma14g00667 | . | . | Cma02g01449 | Cma15g01228 | Car02g01216 | Car15g01107 | . | . | Cpe05g00339 | . | . | . | . | . | . | . | Cla10g00365 | Cam10g0377 | Cec10g0397 | Cco10g0390 | Clacu10g0383 | Cmu10g1218 | Cre10g0632 | Cone8ag0301 | Cone12ag0307 | . | . | . | Csa05g00279 | Chy09g01230 | . | . | . | . | . | . | Bpe11g00603 | Bma05g00820 | Bma12g00075 | . | Cmo02g01485 | Cmo15g01292 | . | . | . | . | . | Cpe13g00155 | Bhi12g00265 | . | . | . | . | . | Lcy12g1649 | Cla01g00260 | . | Cec01g0258 | Cco01g0273 | . | . | Cre09g2254 | Lsi09g00255 | . | . | Cme09g01765 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002869 | 5 | 3 | 4 | 3 | 3 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 3 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 5 | 1 | 2 | 54 |