Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0310 ATGGGGAAGGGAAGACCTAGGGCAGTAGAAAAGGGAGTATTAGGGCAACATTTAAGTGTAGCTTCATCTGGTTCCTTGAATATACCTTCTGGTCCTGTCTTTTATCCATCTGAAGATGAGTTTAGAGATCCGTTGGAATACATTTATAAGATTAGGGTAGAGGCTGAGCCGTATGGGATTTGTAGGATTGTTCCGCCTAAGAGTTGGAAACCGCCATTTGCATTGGATTTAGATTCTTTCACGTTTCCGACCAAAACGCAAGCCATACATCAGTTGCAGGCTCGGCCTTCTTCTTGTGATTCACGGACGTTTGAGTTGGAGTACAATAGGTTTTTGGAGGATCATTGCGGGAAGAAGTTGAAAAAGAGGGTGATTTTTGAGGGGGAGGAGTTGGACTTGTGCAAATTGTTTAACGCGGTGAAGAGGTATGGAGGGTATGATAATGTGGTGAAGGAGAAGAAGTGGGGGGAGGTTTCTAGGTTTGTGAGCTCAGAGACGAAGATTTCAGATTGTGCAAAGCATGTGCTTTGTCAATTATATTGTGAACATTTGTGTGATTATGAGGACTATTATAAGCGGTTGAATAAAGAGGCAAAGAAGGGTTGTAAGAGAGGATTGCATGATGACAGAAAGAGTGGGCAAATGGTTGAACATTTTAGCTTGAAGAAGAGGCAGAAGACTAAAGATGGTGAGAAAGGTAAGGTCTGTAAAGATAAAGTGAAAGAAGAGCATGATCAGATATGTGAACAATGTAGAATTGGATTGCATGGGGAAGTGATGCTTCTATGTGATAGGTGCAATAAGGGATGGCACACATATTGTCTATCTCCTCCTCTAAAGCAGGTCCCACCGGGAAATTGGTACTGCTTAGATTGCTTGAATTCTGACAAAGACAGCTTCGGCTTTGTGCCGGGTAAACAATTTTCCCTGGAAGCGTTCAGGCGCATGGCTGACCGAGCCAGGAAGAAATGGCTTGGCTCAGGTTCTTCTTCACGAGAGCAAATTGAGAAGAAATTTTGGGAAATTGTGGAGGGATCACTAGGTGAGGTTGAAGTCATGTATGGAAGTGATTTGGATACCTCGGTTTGTGGGAGTGGTTTTCCGCATGTATGTGCCCAGAAACCAGAATCAGTTGATGCTAAGGAGTGGGATGAATACAGAGGTAGCCCATGGAATCTTAATAACTTGCCCAAGCTAAAAGGATCGGTCCTTCGAGCTGTTCATCATAATATTACTGGTGTCATGGTACCCTGGTTGTATATTGGAATGCTATTCTCGTCTTTCTGCTGGCACTTTGAAGATCATTGTTTTTATTCAATGAACTATCTACACTGGGGTGAGCCAAAATGCTGGTACAGTGTGCCTGGAAGTGAAGCCACTGCTTTTGAGAAGGTGATGAAGAAAAGCCTTCCTGATCTTTTTGACGCACAACCAGATCTACTCTTTCAGCTTGTCACCATGTTGAATCCATCTGTCTTGCGAGAAAATGGGGTTCCCGTCTATAGCGTGCTCCAGGAGCCTGGAAATTTTGTTATTACCTTCCCTAGATCTTACCATGGAGGTTTCAACCTTGGTTTAAATTGTGCAGAAGCTGTCAATTTTGCTCCTGCTGACTGGATACCTCATGGCGGGTTTGGAGCAGAACTATATCGGCTTTATAGGAAAATTGCAGTTTTGTCTCATGAGGAGCTTCTTTGTGTAGTGGCCAAGAATGAATGTGATGAAAGAGTTTCACCTTATTTAAAGAAAGAGCTTCTTAGGATATATGCCAAGGAGAAAAGCTGGAGAGAGAGACTTTGGAAAAACGGTATTATCAGATCATCTTCCATGGCTCCTAGGAAGTGTCTGGAATATGTGGGTACTGAAGAGGATCCAAAATGCATAATATGCCAGCAGTACCTCTATCTTTCAGCTGTAGTTTGCAGCTGCAGGAGATCTGCTTTTGTCTGCCTGGACCACTGGGAACGTCTTTGTGAATGCAAATACAGCAAGAGGTGTATTCTTTATCGTCACACACTTTTGGACTTGTATGACTTGGTACTTACAGTGAATGAATATGGTTCTGATGAGACAATGCAGAGTCTGGAATTGCAACAGCCAATCTCATGTTTCAGTGAAGCAAATGCTTTGACACGAAAGGTGAAAGATGGTCGGGTCACTTTTGCTGAACTTTCTGAACAGTGGTTATTGAACTCAAGCAAGATTCTTCAGAATCCATTTTCAAATGATGCTTATGTTAAGGTGTTGAAAGAAGCTGAGCAATTTTTTTGGGCTGGGTCAGAGATGGATCCTGTGAGAGCTATGGCAAGAAAGTTGATTGAAACTAAGAAGTGGATGGAAGACATTAAGGATTCTATCGTTAAAGTTGAAAAGTTACAAGGTCATCTAGGTGGCAATGTAGAGAAAATTCACTTCGATGATGTAAATGATTTACTGAGTTTAAACCATTCCCCATGCATCGAGCCTACTTATCTTAAATTGAAGGCTTATACAGAAGAAGCAAGGTTGTTGATTCAGGAAATCAATACTGCTCTATCAACCTCTTCAAATGTCTCTGAGTGGGATGCTCTGTACTCCAGAGCCTATGCGTTGCCAATCTATATTCAACAAAGTGAGAAGTTGGTACAACAAATATCTTTAGTGAAGGTTTGCAAAGCAAGTATCAGGGTAATTATAGAGAATGGTTCTGAAGTTGAGGTTGATGTTCTACACAAGTTGAAGTCACAGGTTATGGAACTTCCTGTTAAACTCCCAGAGACAGAAATGTTATTTGATCTAATAAATCAAGCAGAGTCACACCGTTCCAAGTGTGCTGAAATTATAAAAGGTCCTATAACGCTGAAGATTGTCAAAGAATTTCTTCAAGAATTGGGTAGTTTCAATGTTAGCTTACCTGAATTGAAACTTCTAAGGCAACACCACGTGGATGCTGTTTCATGGATTGCACGCTTTAATAATATTATGGTAAAAATCCATGAGCGAGAGGATCAACATAATGTAATTGATGAGTTGACCTGCATTCTTAGAGATGGATCATCTTTGGCAATTCAAGTTGATGAGTTAGCTAGAGTTGAGGATGAGCTGAAGAAGGCATATTGCAGGGAAAAGGCTCAAAAGTGGAAGCAACGTTGCTTAGAGATTGTAGGGAATTCTGTTGGAGAGAAAAATTCACTGCTCGATGCTCTGGAAGAGATAAAACAGACAGTAGATAGATCTTTGTCTATTTATGACAAGCCATTGGATGGAGAGAGAAATTTAAATGTGTGCTGCTCCACTTCATCTCTGGATGAGAAGCTTCATAATTGTTCAATATGCAAACAAGGCTGCTCTGATCTCTTTTTCTCTGTGCTCTCACTTATTCTTTTTATGGCACAGAAATGTAGAGGAAATCTCCCTAAATTGGAGGAGCTTATTAGGCTGAAATGTGATGCCGAAGATTTCAGTAACTGGATGGAAGAGGGAGATACGTTAACAAAACTTGTCGAACAAGCTCTGGTCTGTAGATCTAGGTTGACGGAAATATCAGATCTTGCTTCACATAATACTAATAAAGATCTTACTATTGTCTTTCAAAGGCTAACTGTTGCTCTCAAGGCTATAGAAGTATCAGGTGTTGATGATTACCACAGCAATAATGCTCTCAAGCTTGCAGTAGTGAAAAACTCGTGGAGATTCAGAGTCAATAAAATACTTGAGGGGTCAGAAAAGCCAACAGTACAACACATTCAAAAACTTCTGAAGGAGGGACTGGCTATTATTAATATATCACCCGAAGATTACTTTAGGCAGAAACTTCTGGACATGAAGAATGTTAGCTCGAAGTGGGCTGAGCGTGCCAAGAAGATATCAGCAGACTCAGGGGCTCTTGCACTCAAAAAAGTTTTTGAATTTATTGCCGAGGGTGAAAATTTGCCTGTGAATGTCGAGAAGGAGCTTAAGCTGCTAAGAACAAGAAGTATGCTTTATTGCATATGCCGTAAACCCTATGATCAAAGAGCAATGATCGCATGTGATCAATGTGATGAATGGTATCACTTTGATTGCATTAAGTTACATTCCACGCCAAAGACTTACATCTGCCCTGCATGTAAACCTCAAACAGTTGAGAAGTCATGTTCTATGCCTGTATCGATTTATTATGAGAGTTCAATTTGCAAAAGAGTTGTGGAGCCCACAACCCGTACTCATCAGGTAAAGCCGAGATTTAAACCGGATGAAATGGAGGCGAATTTAGACCAAAAGATGCTTCCAGTTTTAGATTGTAGTAATGCATTAAGGCGTTCAAGTGGAGTTGAACAGTTATGGTGGAGAAACCGGAAACCATTCAGAAGAGTAGCCAAAAAACGAGCCGAGCTTCAAACTCTTTCTCCGTTTTTCTCCATACAATACAACAGTGAAGGCAAAACTAGGGAATTCTAA 4419 41.0 MGKGRPRAVEKGVLGQHLSVASSGSLNIPSGPVFYPSEDEFRDPLEYIYKIRVEAEPYGICRIVPPKSWKPPFALDLDSFTFPTKTQAIHQLQARPSSCDSRTFELEYNRFLEDHCGKKLKKRVIFEGEELDLCKLFNAVKRYGGYDNVVKEKKWGEVSRFVSSETKISDCAKHVLCQLYCEHLCDYEDYYKRLNKEAKKGCKRGLHDDRKSGQMVEHFSLKKRQKTKDGEKGKVCKDKVKEEHDQICEQCRIGLHGEVMLLCDRCNKGWHTYCLSPPLKQVPPGNWYCLDCLNSDKDSFGFVPGKQFSLEAFRRMADRARKKWLGSGSSSREQIEKKFWEIVEGSLGEVEVMYGSDLDTSVCGSGFPHVCAQKPESVDAKEWDEYRGSPWNLNNLPKLKGSVLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEATAFEKVMKKSLPDLFDAQPDLLFQLVTMLNPSVLRENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWIPHGGFGAELYRLYRKIAVLSHEELLCVVAKNECDERVSPYLKKELLRIYAKEKSWRERLWKNGIIRSSSMAPRKCLEYVGTEEDPKCIICQQYLYLSAVVCSCRRSAFVCLDHWERLCECKYSKRCILYRHTLLDLYDLVLTVNEYGSDETMQSLELQQPISCFSEANALTRKVKDGRVTFAELSEQWLLNSSKILQNPFSNDAYVKVLKEAEQFFWAGSEMDPVRAMARKLIETKKWMEDIKDSIVKVEKLQGHLGGNVEKIHFDDVNDLLSLNHSPCIEPTYLKLKAYTEEARLLIQEINTALSTSSNVSEWDALYSRAYALPIYIQQSEKLVQQISLVKVCKASIRVIIENGSEVEVDVLHKLKSQVMELPVKLPETEMLFDLINQAESHRSKCAEIIKGPITLKIVKEFLQELGSFNVSLPELKLLRQHHVDAVSWIARFNNIMVKIHEREDQHNVIDELTCILRDGSSLAIQVDELARVEDELKKAYCREKAQKWKQRCLEIVGNSVGEKNSLLDALEEIKQTVDRSLSIYDKPLDGERNLNVCCSTSSLDEKLHNCSICKQGCSDLFFSVLSLILFMAQKCRGNLPKLEELIRLKCDAEDFSNWMEEGDTLTKLVEQALVCRSRLTEISDLASHNTNKDLTIVFQRLTVALKAIEVSGVDDYHSNNALKLAVVKNSWRFRVNKILEGSEKPTVQHIQKLLKEGLAIINISPEDYFRQKLLDMKNVSSKWAERAKKISADSGALALKKVFEFIAEGENLPVNVEKELKLLRTRSMLYCICRKPYDQRAMIACDQCDEWYHFDCIKLHSTPKTYICPACKPQTVEKSCSMPVSIYYESSICKRVVEPTTRTHQVKPRFKPDEMEANLDQKMLPVLDCSNALRRSSGVEQLWWRNRKPFRRVAKKRAELQTLSPFFSIQYNSEGKTREF 1472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1695534 1705491 + Conep12aG0032500.1 Cone12ag0310 449154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0310 1472 Gene3D - 98 201 IPR036431 GO:0003677(InterPro)
Cone12ag0310 1472 SMART bright_3 99 193 IPR001606 GO:0003677(InterPro)
Cone12ag0310 1472 SMART JmjN_1 30 71 IPR003349 -
Cone12ag0310 1472 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Cone12ag0310 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1307 1365 IPR013083 -
Cone12ag0310 1472 SUPERFAMILY ARID-like 81 195 IPR036431 GO:0003677(InterPro)
Cone12ag0310 1472 SUPERFAMILY Clavaminate synthase-like 341 572 - -
Cone12ag0310 1472 SMART ARID_2 99 188 - -
Cone12ag0310 1472 SUPERFAMILY FYVE/PHD zinc finger 239 296 IPR011011 -
Cone12ag0310 1472 SMART PHD_3 247 293 IPR001965 -
Cone12ag0310 1472 SMART PHD_3 1322 1364 IPR001965 -
Cone12ag0310 1472 FunFam Predicted protein 353 556 - -
Cone12ag0310 1472 Pfam ARID/BRIGHT DNA binding domain 103 188 IPR001606 GO:0003677(InterPro)
Cone12ag0310 1472 CDD PHD_RSF1 248 292 - -
Cone12ag0310 1472 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Cone12ag0310 1472 Pfam C5HC2 zinc finger 627 679 IPR004198 -
Cone12ag0310 1472 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Cone12ag0310 1472 Pfam PLU-1-like protein 897 1162 IPR013637 -
Cone12ag0310 1472 ProSitePatterns Zinc finger PHD-type signature. 1323 1363 IPR019786 -
Cone12ag0310 1472 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 932 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)
Cone12ag0310 1472 Pfam jmjN domain 32 65 IPR003349 -
Cone12ag0310 1472 SMART cupin_9 385 551 IPR003347 -
Cone12ag0310 1472 SUPERFAMILY FYVE/PHD zinc finger 1313 1366 IPR011011 -
Cone12ag0310 1472 Gene3D Cupin 15 535 - -
Cone12ag0310 1472 CDD ARID 100 188 - -
Cone12ag0310 1472 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677(InterPro)
Cone12ag0310 1472 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Cone12ag0310 1472 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Cone12ag0310 1472 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Cone12ag0310 1472 Pfam PHD-finger 248 292 IPR019787 -
Cone12ag0310 1472 Pfam PHD-finger 1323 1363 IPR019787 -
Cone12ag0310 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 298 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0310 K11446 - - csv:101216734 1545.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0310 Cone-Chr12:1695534 Cone3ag0673 Cone-Chr3:3426695 9.11E-101 dispersed
Cone12ag0310 Cone-Chr12:1695534 Cone8ag0309 Cone-Chr8:1785361 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44431 PF10539 Dev_Cell_Death 6.00E-40 No_clan Cone TR