Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0311 ATGGATGGGAGAGAAGCTATGGCATTATCTGGTGGGTCAGCTTCATACTATCTCCATAGGGGAGAACCAGGTCAAGCGGGCAGCTTTCATTCTCCCCCTGGGTTTAGACCTTCTTCTAATCCTAACCCCAACCCAAACCCAAACCTAAGCATTCTGTCCCATTCAAATGTAAGGGGTAGTAGCTCAGTAGGATCGGCATTTCCCGAGCCATCATCTCATGTTAATTTTTCCCGTGGCATTAGCATTAGTGGGTTCCCTAGAGGGGGCCCCTCTAGTGAGCCTGTAAAGAGGAAAAGAGGGAGGCCAAGAAAGTATGCACCAGATGGGCAGGTCTCTCTTGGGCTCTCTCCTATGTCTGCCAGTTCTAATCAAACTCCGGGTTCTAATTCAAATGCTCCAAAGAAAAATCGAGGTCGGCCTCCTGGAAGTGGAAGGAAACAACAATTGGCTTTGCTTGGTGAATGGATGAACAATTCTGCTGGACAGGCATTTACACCACATGTGATTCGCATCCAACCTGGAGAGGATATTGTTGCAAGAATATTATCATTTTCACAACAAAGGCCAAGAGCAGTTTGCATTATGTCTGGTAATGGAACAGTATCTTCTGTGACATTACGTCAACCAACATCATCGACCGGAGTCAGTGTCACATATGCGGTTAAACAACTTGGGGAGATTTCAGATATTGGTCTTGTCTGGTTCGTACTTAGTTGCTGA 720 46.25 MDGREAMALSGGSASYYLHRGEPGQAGSFHSPPGFRPSSNPNPNPNPNLSILSHSNVRGSSSVGSAFPEPSSHVNFSRGISISGFPRGGPSSEPVKRKRGRPRKYAPDGQVSLGLSPMSASSNQTPGSNSNAPKKNRGRPPGSGRKQQLALLGEWMNNSAGQAFTPHVIRIQPGEDIVARILSFSQQRPRAVCIMSGNGTVSSVTLRQPTSSTGVSVTYAVKQLGEISDIGLVWFVLSC 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1708357 1711676 + Conep12aG0032600.1 Cone12ag0311 449155
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0311 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 219 IPR039605 GO:0003680(InterPro)
Cone12ag0311 239 Gene3D - 166 229 - -
Cone12ag0311 239 PRINTS AT-hook-like domain signature 96 106 IPR017956 GO:0003677(InterPro)
Cone12ag0311 239 PRINTS AT-hook-like domain signature 132 143 IPR017956 GO:0003677(InterPro)
Cone12ag0311 239 MobiDBLite consensus disorder prediction 15 146 - -
Cone12ag0311 239 ProSiteProfiles PPC domain profile profile. 161 239 IPR005175 -
Cone12ag0311 239 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 211 IPR005175 -
Cone12ag0311 239 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 214 - -
Cone12ag0311 239 MobiDBLite consensus disorder prediction 45 79 - -
Cone12ag0311 239 CDD DUF296 165 227 IPR005175 -
Cone12ag0311 239 MobiDBLite consensus disorder prediction 114 136 - -
Cone12ag0311 239 SMART AT_hook_2 134 146 IPR017956 GO:0003677(InterPro)
Cone12ag0311 239 SMART AT_hook_2 96 108 IPR017956 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0311 Cone-Chr12:1708357 Cone18ag1088 Cone-Chr18:7983114 1.12E-37 dispersed
Cone12ag0311 Cone-Chr12:1708357 Cone14ag0350 Cone-Chr14:1623455 3.28E-40 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone15ag0383 Cone-Chr15:1761417 4.14E-38 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone6ag0774 Cone-Chr6:3945485 1.12E-53 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone8ag0311 Cone-Chr8:1798718 3.45E-130 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0311 - - - 0.0