Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0311 | ATGGATGGGAGAGAAGCTATGGCATTATCTGGTGGGTCAGCTTCATACTATCTCCATAGGGGAGAACCAGGTCAAGCGGGCAGCTTTCATTCTCCCCCTGGGTTTAGACCTTCTTCTAATCCTAACCCCAACCCAAACCCAAACCTAAGCATTCTGTCCCATTCAAATGTAAGGGGTAGTAGCTCAGTAGGATCGGCATTTCCCGAGCCATCATCTCATGTTAATTTTTCCCGTGGCATTAGCATTAGTGGGTTCCCTAGAGGGGGCCCCTCTAGTGAGCCTGTAAAGAGGAAAAGAGGGAGGCCAAGAAAGTATGCACCAGATGGGCAGGTCTCTCTTGGGCTCTCTCCTATGTCTGCCAGTTCTAATCAAACTCCGGGTTCTAATTCAAATGCTCCAAAGAAAAATCGAGGTCGGCCTCCTGGAAGTGGAAGGAAACAACAATTGGCTTTGCTTGGTGAATGGATGAACAATTCTGCTGGACAGGCATTTACACCACATGTGATTCGCATCCAACCTGGAGAGGATATTGTTGCAAGAATATTATCATTTTCACAACAAAGGCCAAGAGCAGTTTGCATTATGTCTGGTAATGGAACAGTATCTTCTGTGACATTACGTCAACCAACATCATCGACCGGAGTCAGTGTCACATATGCGGTTAAACAACTTGGGGAGATTTCAGATATTGGTCTTGTCTGGTTCGTACTTAGTTGCTGA | 720 | 46.25 | MDGREAMALSGGSASYYLHRGEPGQAGSFHSPPGFRPSSNPNPNPNPNLSILSHSNVRGSSSVGSAFPEPSSHVNFSRGISISGFPRGGPSSEPVKRKRGRPRKYAPDGQVSLGLSPMSASSNQTPGSNSNAPKKNRGRPPGSGRKQQLALLGEWMNNSAGQAFTPHVIRIQPGEDIVARILSFSQQRPRAVCIMSGNGTVSSVTLRQPTSSTGVSVTYAVKQLGEISDIGLVWFVLSC | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1708357 | 1711676 | + | Conep12aG0032600.1 | Cone12ag0311 | 449155 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0311 | 239 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 62 | 219 | IPR039605 | GO:0003680(InterPro) | |
| Cone12ag0311 | 239 | Gene3D | - | 166 | 229 | - | - | |
| Cone12ag0311 | 239 | PRINTS | AT-hook-like domain signature | 96 | 106 | IPR017956 | GO:0003677(InterPro) | |
| Cone12ag0311 | 239 | PRINTS | AT-hook-like domain signature | 132 | 143 | IPR017956 | GO:0003677(InterPro) | |
| Cone12ag0311 | 239 | MobiDBLite | consensus disorder prediction | 15 | 146 | - | - | |
| Cone12ag0311 | 239 | ProSiteProfiles | PPC domain profile profile. | 161 | 239 | IPR005175 | - | |
| Cone12ag0311 | 239 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 166 | 211 | IPR005175 | - | |
| Cone12ag0311 | 239 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 162 | 214 | - | - | |
| Cone12ag0311 | 239 | MobiDBLite | consensus disorder prediction | 45 | 79 | - | - | |
| Cone12ag0311 | 239 | CDD | DUF296 | 165 | 227 | IPR005175 | - | |
| Cone12ag0311 | 239 | MobiDBLite | consensus disorder prediction | 114 | 136 | - | - | |
| Cone12ag0311 | 239 | SMART | AT_hook_2 | 134 | 146 | IPR017956 | GO:0003677(InterPro) | |
| Cone12ag0311 | 239 | SMART | AT_hook_2 | 96 | 108 | IPR017956 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0311 | Cone-Chr12:1708357 | Cone18ag1088 | Cone-Chr18:7983114 | 1.12E-37 | dispersed | |
| Cone12ag0311 | Cone-Chr12:1708357 | Cone14ag0350 | Cone-Chr14:1623455 | 3.28E-40 | wgd | |
| Cone12ag0311 | Cone-Chr12:1708357 | Cone15ag0383 | Cone-Chr15:1761417 | 4.14E-38 | wgd | |
| Cone12ag0311 | Cone-Chr12:1708357 | Cone6ag0774 | Cone-Chr6:3945485 | 1.12E-53 | wgd | |
| Cone12ag0311 | Cone-Chr12:1708357 | Cone8ag0311 | Cone-Chr8:1798718 | 3.45E-130 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0311 | - | - | - | 0.0 |