Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0313 ATGACTTGCACTTCTTGCTCTTCAATTGTCGAGTCATCTTTACAAGCGATTAATGGTGTACGAAAAGCACGAGTTGCATTAGCAATCGAAGAAGCCGAAGTATATTACGATCCGAAATTTGTTAATTGCAATCAACTAGTGAAAACCATACAAGATTCGGGATTTGAAGCCATACTTGTCACCAATGGAGAAAATATAAGCAAGATAGAGCTTAAAGTTGAAGGCATAGAGTCCGACGACTCGATTCAGATAATTGAAAAATCGCTTGGAGCAACGGTAGGTATTCAAGACATAGACATAGACATAAAACGCAAGAAAGTTTTGATTTCTTACAAACCAGATATGACCGGACCGAGAATATTTATTGAAGCGATCGAGTCGATCAAAACCGAGCATTTCAAAGCAACTTTATATCCCGAAGAAGGAAGAGGAAGTCAGCGGCAAAAAGAAATTAAGCAATACTATAGATCCTTCATGTGGAGTTTTGTTCTTACCATTCCCGTTTTTTTGACCTCCATGATCTTCATGTACATCCCGAGAATTAATCACGTGCTAGAGATCAAAGTAGTGAATATGATGAACATTGGAGAGATTATCAGGTGGGAACTATCCACAATCGTGCAATTCTACATCGGTCGAAGATTTTACGTTGGTTCTTATAAAGCATTACGAAATGGGTCAGCCAATATGGATGTTTTGATTGCATTGGGAACAAATGCAGCCTACTTCTATTCGGTATACTCCGTGTTAAGAGCCGCTACATCTCGGGATTTTAAGGGTATGGATTTCTTCGAGACTAGTTCCATGCTAATTTCATTTATTCTCCTCGGTAAATATCTGGAGGTTTTAGCAAAGGAAAAGACCTCTAATGCCATTGCCAAGCTAATGCACCTTAGTCCCGATACGGCAACATTACTGACTTTGGATGATGAGGGGAATGTGATAGGTGAACAGGAAATTGATAGCCGGTTAGTACAAAAGAATGATGTAATTAAGATTGTTCCGGGTGCTAAAGTAGCTTCTGATGGGATCGTTTTATGGGGAGAAAGTCATGTAAACGAGAGTATGATAACTGGAGAAGCACATCCGGTTGGAAAACAGAAGGGTGATGTAGTGATTGGTGGGACCACGAATGAGAACGGAGTGTTGCGTATTAAGGCGACTAGGGTTGGCTCGGAGAGTGCTCTTGCGCAAATTATTCGGCTGGTTGAATCGGCCCAAATGGCTAAAGCTCCAGTTCAGAAATTCGCCGACCGAATATCTAAGTACTTTGTACCAATGGTCATTTCATTTTCATTTCTTACTTGGGTGGCTTGGCTTTTAGCTGGGAGGTACAATTGTTACCCCATTTCATGGATACCGACTTCGATGAATAGCTTTGAACTTGCACTCCAATTCGGGATTTCCGTTATGGTAATAGCTTGCCCTTGTGCACTTGGCTTAGCAACTCCAACCGCAGTTATGGTCGGGACTGGAGTTGGTGCGTCACAAGGAGTATTAATCAAAGGCGGCCAAGCTTTAGAATGTGCACATAAGACTGGAACGCTTACTATTGGAAAGCCGACGGTCGTAAGCATAAAGCTCTTTAAGACTATGATACTTAGAGATCTCCTTGAACTTGTTGCTGCAACTGAGGTGAATAGTGAGCACCCATTAGCAAAGGCCATTGTCGAGTATGCCAAGAAATTAAGAGAAGATCCGAACCCTGTCTGGCCCGAAGCACGTGATTTTATAGCCATTGTTGGACATGGAGTGAAAAGTATAGTAAGAAACAAGGAAATGCTTGTGGGAAACAAGAGCCTAATGACAGATCACAACATAGTCATTCCAGCAGATGCCGAAAGTTTTCTTGTTGATTCTGAAAGCAGGGCTCAAACTGGGATCCTTGTATCAATAGATGGGGAGTTAGTAGGTGCTTTAGCCATATCTGATCCTCTTAAACCAAGTGCACATGAGGTCATTTCCATTCTCAAGTCTATGAAAGTCAGGAGCATCATGGTGACAGGCGACAATTGGGGTACCGCAAATTCCATTGCCCGAGAAGTTGGTATAGAAACAGTTATCGCCGAGGTGAAACCCGAAGACAAAGCCGAGAAAGTTAAGGCATTGCAGGCTTCAGGCTATATAGTAGCAATGGTGGGAGATGGCATCAATGACTCGCCGGCATTAGTATCGGCAAATGTCGGGATAGCAATAGGAGCCGGGACTGACATAGCTATTGAGGCAGCAAGCATTGTTCTAATGAAAAGCGATCTAGAGGATGTGATAACGGCCATCGATCTTTCTCGAAAAACATTTTCTCGTATCCGTTTGAACTATATTTGGGCTTTAGGTTATAACCTCCTAGGCATTCCAATTGCTGCCGGAGTGCTTTTCCCTTCAACGAAATTCCGATTACCCCCATGGATTGCCGGAGCTGCCATGGCAGCTTCTTCTGTCAGTGTTGTTTGCTCTTCTTTGATGTTGAAGAACTATGAGAGACCAAAGAAGCTTTGCAACCTTAAGATGAATGGAATAATGATTGAATAA 2529 42.43 MTCTSCSSIVESSLQAINGVRKARVALAIEEAEVYYDPKFVNCNQLVKTIQDSGFEAILVTNGENISKIELKVEGIESDDSIQIIEKSLGATVGIQDIDIDIKRKKVLISYKPDMTGPRIFIEAIESIKTEHFKATLYPEEGRGSQRQKEIKQYYRSFMWSFVLTIPVFLTSMIFMYIPRINHVLEIKVVNMMNIGEIIRWELSTIVQFYIGRRFYVGSYKALRNGSANMDVLIALGTNAAYFYSVYSVLRAATSRDFKGMDFFETSSMLISFILLGKYLEVLAKEKTSNAIAKLMHLSPDTATLLTLDDEGNVIGEQEIDSRLVQKNDVIKIVPGAKVASDGIVLWGESHVNESMITGEAHPVGKQKGDVVIGGTTNENGVLRIKATRVGSESALAQIIRLVESAQMAKAPVQKFADRISKYFVPMVISFSFLTWVAWLLAGRYNCYPISWIPTSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALECAHKTGTLTIGKPTVVSIKLFKTMILRDLLELVAATEVNSEHPLAKAIVEYAKKLREDPNPVWPEARDFIAIVGHGVKSIVRNKEMLVGNKSLMTDHNIVIPADAESFLVDSESRAQTGILVSIDGELVGALAISDPLKPSAHEVISILKSMKVRSIMVTGDNWGTANSIAREVGIETVIAEVKPEDKAEKVKALQASGYIVAMVGDGINDSPALVSANVGIAIGAGTDIAIEAASIVLMKSDLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTKFRLPPWIAGAAMAASSVSVVCSSLMLKNYERPKKLCNLKMNGIMIE 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1713702 1716735 - Conep12aG0032800.1 Cone12ag0313 449157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0313 842 FunFam Probable copper-transporting ATPase HMA5 623 770 - -
Cone12ag0313 842 FunFam Copper-transporting ATPase 1, putative 285 407 - -
Cone12ag0313 842 Pfam Heavy-metal-associated domain 71 129 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 ProSiteProfiles Heavy-metal-associated domain profile. 67 133 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 841 - -
Cone12ag0313 842 Gene3D - 523 644 IPR023299 GO:0000166(InterPro)
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 353 367 - -
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 660 670 - -
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 713 732 - -
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 638 649 - -
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 736 748 - -
Cone12ag0313 842 PRINTS P-type cation-transporting ATPase superfamily signature 509 523 - -
Cone12ag0313 842 SUPERFAMILY HMA, heavy metal-associated domain 63 130 IPR036163 GO:0046872(InterPro)
Cone12ag0313 842 CDD HMA 70 127 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 FunFam ATPase copper transporting beta 1 62 - -
Cone12ag0313 842 CDD HMA 1 57 IPR006121 GO:0046872(InterPro)
Cone12ag0313 842 Pfam haloacid dehalogenase-like hydrolase 512 726 - -
Cone12ag0313 842 Gene3D - 484 770 IPR023214 -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 747 761 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 83 97 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 426 440 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 690 707 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 215 234 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 287 305 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 267 286 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase signature 786 800 - -
Cone12ag0313 842 NCBIfam HAD-IC family P-type ATPase 270 795 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone12ag0313 842 NCBIfam heavy metal translocating P-type ATPase 230 822 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone12ag0313 842 Gene3D - 285 407 - -
Cone12ag0313 842 SUPERFAMILY Calcium ATPase, transmembrane domain M 266 781 IPR023298 -
Cone12ag0313 842 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase 1 signature 213 238 - -
Cone12ag0313 842 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Cone12ag0313 842 CDD P-type_ATPase_Cu-like 156 809 - -
Cone12ag0313 842 Pfam E1-E2 ATPase 298 495 - -
Cone12ag0313 842 SUPERFAMILY HAD-like 512 819 IPR036412 -
Cone12ag0313 842 Gene3D - 68 137 - -
Cone12ag0313 842 Gene3D - 1 59 - -
Cone12ag0313 842 SUPERFAMILY HMA, heavy metal-associated domain 1 65 IPR036163 GO:0046872(InterPro)
Cone12ag0313 842 SUPERFAMILY Calcium ATPase, transduction domain A 317 403 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0313 Cone-Chr12:1713702 Cone6ag0759 Cone-Chr6:3867984 0 dispersed
Cone12ag0313 Cone-Chr12:1713702 Cone8ag0313 Cone-Chr8:1804426 0 wgd
Cone12ag0313 Cone-Chr12:1713702 Cone9ag0775 Cone-Chr9:3710036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0313 K17686 - cit:102615719 1245.34