Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0314 ATGGCAGTTACTCCGATTTGTTGGAGCAGCATTGTGAAAAGCGAACCAGCTCCAAAGATTCATGATCAACGATCGATTCCATCAAACAAAGTCTTCGTCGAGAGCTGCAAATCTAGCAAAGGCATAGCCGTCGCCGTCGTTGATGCGAATGCCCTAATCCAGGGGGTGGAGCAGCTTTCCACCTGTGCCGATAAGTTTGTCTCTGTTCCTGAAGTTTTGGATGAGGTCCGTGATGCTAATTCTCAACATAGGCTCGCTTTTTTGCCTTTTACGCTCGATCCCATGGAACCCTCACCTGAAGCCCTTGATAAAGTTATAAAATTTTCGAGGGCGACTGGTGATTTTCAAACGCTTTCAGATGTCGATCTTAAACTCATCGCCCTTACTTATATGTTAGAAGCTCAAATCCATGGCACAAAACAGCTTAGGGACTCACCTCCTCCTGTCCATATGGTTAATGTCAAGAGGTTGCCGGAAAAAGACATGCCAGGTTGGGGTAACAATGTTCCTAATCTAGAAGAGTGGGAAGCATTAGATCAAGAAGTTGAGGTTCCATCAAACCCCAATTCAAGGATCCTTCCCCTTCAAGATTTAAGCTTGAATACCATTCCTTCAGATACCCATTCTGAAAATGGTTCAGTAGATCATGGGGATGAGGTTCATTATGAAAATGAAGATGATGGTTCAAGGAAACCCAGGAGATATCCACCGAAAAAAAGGGAGATTAATATTGAAGGGAAGAAAATGGTCGCAAATGGAGTTGATGCATCTAAGGGGCTTGTTGATGATGATGAAGGTGAATGGATGCCTGCTGTTAGTAGAAGTACTCATAGAAGATATCTAAGGAGAAAAGCTAAGCGTGAAAATCATGAGGCATTATCTGAAAAGGACGGTCAACAAGATGAAGATGAAGATGATCAACCACTTTCGGGGAAGAATGTTAATGAGAACCTCTCTGAAGTCATGAAGCAGATGAATTTGAAAGAAGATGGGAAGGATTCTGTTGAAATTACTGCAGAGGATGCTAATTCTGACAGTAATGTAAATATGGTAGTTGAAGAAGGAGATGAGATTGATATAGAAAATGAAGGGTCTGATCATGCGGAGGTTTCAAGCCAGAGTAATGAAAGTATTGATGTGTCATGTGCTGATGATGATAATAGTGAACAGAGCTGGATGTTGAGATCCCTGTCTGAATCCAGCATTGCTTGTATCACAAGCGACTTTGCTATGCAAAATGTTATTCTCCAGATGGGTTTACGCCTTCTAGCACCCGGAGGAATGCAGATCCGCCAGCTTCATAGGTGGATTTTGAAATGCCATGCCTGCTTTACTGTTACTGCTGAAATTGGGAGGATTTTTTGTCCAAAGTGTGGAAATGGTGGGACTTTACGCAAGGTAGCTGTTAAGGTTGGTCAGAATGGAATTGTTTTATCGGACCGCAAACCAAGGATCAGTTTGCGCGGTACGAAATATTCCTTGCCTTCCCCACAAGGTGGCCGAGATGCCATTACGAAGAACCCCATTTTGCGTGAAGATCAACTTCCCCAAAAGTTCCTTTATCCTAAGACAAAGAAGAAAGCGAATAAACAGGAAGATGATCTTCTCTTCACTTCAGATGACCTCTTTAGCCACCATGGGGCCAAGAAAGCTCCTCTCCAGCCTCCCATAAGGAAAGCTTTGGCAGTTTTCAGTGGGAAGAGAAATCCTAATGACAATCACTACTCTCGTTCCAACCATAGATAG 1746 43.13 MAVTPICWSSIVKSEPAPKIHDQRSIPSNKVFVESCKSSKGIAVAVVDANALIQGVEQLSTCADKFVSVPEVLDEVRDANSQHRLAFLPFTLDPMEPSPEALDKVIKFSRATGDFQTLSDVDLKLIALTYMLEAQIHGTKQLRDSPPPVHMVNVKRLPEKDMPGWGNNVPNLEEWEALDQEVEVPSNPNSRILPLQDLSLNTIPSDTHSENGSVDHGDEVHYENEDDGSRKPRRYPPKKREINIEGKKMVANGVDASKGLVDDDEGEWMPAVSRSTHRRYLRRKAKRENHEALSEKDGQQDEDEDDQPLSGKNVNENLSEVMKQMNLKEDGKDSVEITAEDANSDSNVNMVVEEGDEIDIENEGSDHAEVSSQSNESIDVSCADDDNSEQSWMLRSLSESSIACITSDFAMQNVILQMGLRLLAPGGMQIRQLHRWILKCHACFTVTAEIGRIFCPKCGNGGTLRKVAVKVGQNGIVLSDRKPRISLRGTKYSLPSPQGGRDAITKNPILREDQLPQKFLYPKTKKKANKQEDDLLFTSDDLFSHHGAKKAPLQPPIRKALAVFSGKRNPNDNHYSRSNHR 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1722709 1725533 + Conep12aG0032900.1 Cone12ag0314 449158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0314 581 PANTHER RNA-BINDING PROTEIN NOB1 32 580 IPR039907 GO:0004521(PANTHER)|GO:0030490(PANTHER)|GO:0030688(PANTHER)
Cone12ag0314 581 MobiDBLite consensus disorder prediction 201 250 - -
Cone12ag0314 581 MobiDBLite consensus disorder prediction 275 313 - -
Cone12ag0314 581 Coils Coil 282 302 - -
Cone12ag0314 581 Pfam Nin one binding (NOB1) Zn-ribbon like 430 500 IPR014881 -
Cone12ag0314 581 MobiDBLite consensus disorder prediction 211 246 - -
Cone12ag0314 581 PIRSF Nob1 25 581 IPR017117 GO:0004521(InterPro)|GO:0042274(InterPro)
Cone12ag0314 581 Gene3D - 36 145 - -
Cone12ag0314 581 Gene3D - 424 499 IPR036283 -
Cone12ag0314 581 Pfam PIN domain of ribonuclease 46 132 IPR033411 -
Cone12ag0314 581 CDD PIN_Nob1-like 46 157 IPR033411 -
Cone12ag0314 581 SUPERFAMILY NOB1 zinc finger-like 430 493 IPR036283 -
Cone12ag0314 581 MobiDBLite consensus disorder prediction 364 384 - -
Cone12ag0314 581 MobiDBLite consensus disorder prediction 367 384 - -
Cone12ag0314 581 FunFam 20S-pre-rRNA D-site endonuclease NOB1 36 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0314 K11883 - - csv:101221544 775.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0314 Cone-Chr12:1722709 Cone8ag0314 Cone-Chr8:1817251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g340 . . . . . . . Bma14g00617 . . Cma02g01465 Cma15g01219 . Car15g01099 . . Cpe05g00323 . . . . . . . . . . . . . . Cone8ag0314 Cone12ag0314 . . . Csa05g00295 Chy09g01211 . Blo03g00335 . . . . Bpe11g00652 . . . Cmo02g01502 Cmo15g01284 . . . . . Cpe13g00161 Bhi12g00235 . . Lac11g2109 . . Lcy12g1665 Cla01g00276 Cam01g0286 Cec01g0279 Cco01g0292 Clacu01g0285 Cmu01g0272 Cre09g2235 . . . Cme09g01748
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37