Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0321 ATGGTGGCCAAAGGGTCGCGGGACAGGCTTCCGGCCGGTTGGACTGTGCAATTTAAAGTCCAAAAGACTGGTCGTCGAATTAGGCTCTACAAAAATTTGGAAACAGGGAAAAGTTTCTTTTCTAAGCATGAATTTGTCAATTATGTTAAAAGCAATCCCAGCAATAAGCCTCTTCCAGCCCATAAAGAGGGAGAAACCAGTCCTGTGCAACCTGTAGTACAAGGAAGTGAACAGCCGGAGTGGTTACCTGATGGTTGGAATATGGAGTTAAAGACCCGAATGAGTGGTCCAAAAATTGGATCTGTGTACAAGTGTTACTCTCACCCATCAACTGGAAGCAGATTCTATTCCAAGCCGGAGGTGCTTCGGCATCTAAGAACTGTAAAGCGCGAGCCTTGCACATCCAGACAGAGAGAGAAAAGAGATAGTGTGCCCCCTACAAGCAAAGTCATGGCTGAGCAGTACAAGGAGGATGATCTGCCACTAGGGTGGATAAAGGAAGTCAAGATTAGTAGGAAATCAAGTGGTCAAAGAAAAGAATGGCTCTACAAAAATTTGGAAACAGGGAAAAGTTTCTTTTCTAAGCATGAACTTGTCAATGTTAAAAGCAATCCCAACAATAAGCCTCTACCAGCCCATAAAGAGGAAGAAACCAGTCCTGTGCAACCTGTAGTGCAAGCAAGTGAGCAGCCTGAATGGTTACCTGATGGTTGGAATATGGAGTTAAGGACCCGAATGAGTGGTCCAAAAATTGGAACTGTGTACAAGTGCTACTCTGATCCATCAACAGGAAGCAAATTCTATTCCAAGCCGGAGGTGCTTCGGCATCTTAGAAATGTAAAGTACAAGCCTTGCACATCCAGACAGAGGGAGAAAAGAGAGCGTGCGCCCTCTACGAGCAAAGTCATGGCTGAGCAGTACAAGGGGGATGATTTGCCACCAGGGTGGATAAAGGAAGTCAAGATTAGTAGGAAATCAAGTGGTAAAAGAAAAGACTGGTATTACACAGATCCAACAACTGGCTATGTCTTCCGCTCTCGAAAGGATGTTTTCCACTATCTTCAAACTGGAGAGATTTGTAAACATGCATACAAATCAAAGAAATGGGGCTCGGATAATCTTGGGCTGACTCATGACAAAAGATCAGCACCAAGCACCGCTAAGAGGCAGAAATTAGAGGCTCCTTTAGATGCCAAAAAAAGTGCAAATGATGATCCAAGCTCAGGTTTACCAAAATCCGAACAGTCAGAGAAAAATAAAGGCAGAAGAGTATCTCCTAGAAATGTCTCCGTTTCAACTGAAATTGTCCATGACAAGTGTATGCCAGAGAAAGTGACAAAATTTTCTATGGAAAATAAGGAAGAGGGGGATCCGAGCTCAGGTTTGTGGTTGCCTAAAGCCAAGCATTCAGAGAGTAATATAAGCAGAAGAGTATCTCTTCGGAATGTTTCTGTTTCAATTGCAGCGGAGGATGGTTTCTCACAAAAGAAGAATTCTGAAATTGTCCAAGAGACACCTGAGAAAGTTTCAGAGAGTAATAAAAGCAGAAGGGTGTCGCCTAGAAATGTTTCTCTTTCAACTGTTCCAGGTTCACAAAAGAAAAAGAGTTCCTCTACAGCTGAAGTTGTCGAAGAGAAACCAAAAGCTGATCATGTAGAGAGAAATACAAGCCAAAGGGTATCTCCTAGAAATGTTTCTGTTTCAACTGTTCCAGATGATCATTCACAAAAGAAGAATTCATCAAAAGCTGAAATTGTCCAAGAGAAGCTAAAAGCTGAATATTCAGATGGAAATACAAACCGAAGGGTGTCTGCTAGAAATGTTTCTGTTTCAACTTCTGAAGATTTCTCCTCAAAGAAGAATTCCTCTACAGCCAAAATTGTCCAAAATGTGGGTCCGTCAGAGAAAGTGAATGAAGAAGATGAGATTCCCGAGAGTAAAAAAGGCAAAAAAGAATCCCCACAAGGTGTTACTACAGGGCTAGCAGATGATTTGTTACAAAAGAAGAATTCACTAGAGAGCAAGCCGGAAAGTAACAACATTTCAAGCAAAAGGACTAGATCAAGCAAGCCCAAGAACCAGAAAGATCTTAGCTTGCCTTGTAGATCTTCAAAACGACTTGCTGTGTTCGGACTCCAATCTCAGCCCAATCCAGACTCAGATGAACCTTCTCAAGTTCCCAAGCAAACAGTTTCATCTTCCGGTCAATTTTTGGATAAACCATGTGAACAATTTGTGGACAGGCTAACAGTTAATATAGATAACACCTCAAAGCCCATAAGCATTCCACTGGATGAGAGTCCATCAAAAGAGAAAGAGAAAATCCCTCTTGAGAGCATAGATCCCCTTGAAGAAAGACGGCCGAGTATGGAAGCTGAAAAAATGGAACCCATAGCTGTTCCATTTGCGGATTTTTTATCAGACCCATGTCTAGAATTTGCAATCAAGACTCTTACAGGGGCATTGCCAATGGAGAATGCCACTACTACTACTACTACTCAGATCGAGCCTGTAATCTCAACTTCTGCACCTGATAACTTGGTTGATCATGATCACGGGCCGCAAAATTGCATCTGTAAAAACATTCAAGCTGCATCCAAAAGAATGGGGAAAAAGAAAGAACCTGGTTTGCCTCGTCGTCAACCTACGAAAAAACCGTCTGAACGAACTGGTGGGCCCAAACTGGGCCCGAAGTTTGGCTCTGACTCATCTTCTTGGGCTCATCAGTCTTACCTAAATCCAAATAGAATGCTATCTTTTGGTTTTGCAGATACAACATCACATGGAGAGCCTTCTTACTCGTATTACTCATCCGAATTAGGAACAACAGGGCTGTTCACAACAGTACCCCACGAGCCATCCAAAAAGATGGAAGAAAAAAATTTCCCAAACGGAGCTGTTTCCATAGATCAACGACAAGAACAAGAACAGCAAACTCTATTTCAGACAAAAAATGATAATGAAAAACTGAACTCGCATGTCCCCTTTCTGTTTGGGGATGCTTGGTCTGACCCGTGCTTAGATTTTGCATTCAAGACTCTTACAGGAGCAATACCAGTAGAGGATAGTTTTGGAATTGACAAGTACTATCAAGAAAGGCAGCTTAATAATTCTCATAACCATAGAGATACTAGCTCTACATTGCCCGATTATGGTCCGCCCGGGTTTTGCCTCAATGATATATCGGCCCATTTTGATGGACCGGAGAAGTCCCTGTTTCAACCAGTGGTGATTAATAATGCCAATTTACCCAGTTTTAACAGGGTTTCTACGCAACAAGCTTGTTTGAACAGCAAGGATTTTCAAGGGAGATTGAAACCTTAG 3324 42.33 MVAKGSRDRLPAGWTVQFKVQKTGRRIRLYKNLETGKSFFSKHEFVNYVKSNPSNKPLPAHKEGETSPVQPVVQGSEQPEWLPDGWNMELKTRMSGPKIGSVYKCYSHPSTGSRFYSKPEVLRHLRTVKREPCTSRQREKRDSVPPTSKVMAEQYKEDDLPLGWIKEVKISRKSSGQRKEWLYKNLETGKSFFSKHELVNVKSNPNNKPLPAHKEEETSPVQPVVQASEQPEWLPDGWNMELRTRMSGPKIGTVYKCYSDPSTGSKFYSKPEVLRHLRNVKYKPCTSRQREKRERAPSTSKVMAEQYKGDDLPPGWIKEVKISRKSSGKRKDWYYTDPTTGYVFRSRKDVFHYLQTGEICKHAYKSKKWGSDNLGLTHDKRSAPSTAKRQKLEAPLDAKKSANDDPSSGLPKSEQSEKNKGRRVSPRNVSVSTEIVHDKCMPEKVTKFSMENKEEGDPSSGLWLPKAKHSESNISRRVSLRNVSVSIAAEDGFSQKKNSEIVQETPEKVSESNKSRRVSPRNVSLSTVPGSQKKKSSSTAEVVEEKPKADHVERNTSQRVSPRNVSVSTVPDDHSQKKNSSKAEIVQEKLKAEYSDGNTNRRVSARNVSVSTSEDFSSKKNSSTAKIVQNVGPSEKVNEEDEIPESKKGKKESPQGVTTGLADDLLQKKNSLESKPESNNISSKRTRSSKPKNQKDLSLPCRSSKRLAVFGLQSQPNPDSDEPSQVPKQTVSSSGQFLDKPCEQFVDRLTVNIDNTSKPISIPLDESPSKEKEKIPLESIDPLEERRPSMEAEKMEPIAVPFADFLSDPCLEFAIKTLTGALPMENATTTTTTQIEPVISTSAPDNLVDHDHGPQNCICKNIQAASKRMGKKKEPGLPRRQPTKKPSERTGGPKLGPKFGSDSSSWAHQSYLNPNRMLSFGFADTTSHGEPSYSYYSSELGTTGLFTTVPHEPSKKMEEKNFPNGAVSIDQRQEQEQQTLFQTKNDNEKLNSHVPFLFGDAWSDPCLDFAFKTLTGAIPVEDSFGIDKYYQERQLNNSHNHRDTSSTLPDYGPPGFCLNDISAHFDGPEKSLFQPVVINNANLPSFNRVSTQQACLNSKDFQGRLKP 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1752595 1758451 + Conep12aG0033600.1 Cone12ag0321 449165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 285 299 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 130 150 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 538 557 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 558 574 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 635 652 - -
Cone12ag0321 1107 SUPERFAMILY DNA-binding domain 311 361 IPR016177 GO:0003677(InterPro)
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 867 887 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 476 500 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 597 631 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 672 700 - -
Cone12ag0321 1107 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 72 145 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 516 537 - -
Cone12ag0321 1107 PANTHER OS04G0193200 PROTEIN 4 57 IPR038945 -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 52 80 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 501 515 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 865 907 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 285 308 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 708 739 - -
Cone12ag0321 1107 SUPERFAMILY DNA-binding domain 77 131 IPR016177 GO:0003677(InterPro)
Cone12ag0321 1107 Gene3D - 73 134 - -
Cone12ag0321 1107 Gene3D - 225 283 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 204 227 - -
Cone12ag0321 1107 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 224 297 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 575 596 - -
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 437 454 - -
Cone12ag0321 1107 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 302 374 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 382 400 - -
Cone12ag0321 1107 Pfam Methyl-CpG binding domain 76 128 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 Pfam Methyl-CpG binding domain 312 359 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 Pfam Methyl-CpG binding domain 228 281 IPR001739 GO:0003677(InterPro)
Cone12ag0321 1107 MobiDBLite consensus disorder prediction 371 739 - -
Cone12ag0321 1107 SUPERFAMILY DNA-binding domain 228 284 IPR016177 GO:0003677(InterPro)
Cone12ag0321 1107 Gene3D - 135 220 - -
Cone12ag0321 1107 Gene3D - 284 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0321 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g367 . . . . . . . . . . . Cma15g01410 . Car15g01272 . . Cpe05g00314 . . . . . . . . . . . . . . . Cone12ag0321 . . . . . . . . . . . . . . . . Cmo15g01482 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010700 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 31