Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0326 ATGGCTTCGTCATCTGCTCCACCTTCCGGAGGCGGCGGAGGCGGCGGAAGCAGCAGCAGCAGTAGCTATGATATTCCTTGGGTTGAGAAGTACCGGCCGAGCAAAGTCGCCGACATAGTGGGCAATGAAGACGCCGTCTCAAGGCTCCAAGTCATTGCTCGCGACGGAAACATGCCTAATCTCATCTTAGCTGGGCCTCCTGGAACTGGTAAAACCACTAGTATACTAGCTCTTGCACATGAGCTTTTGGGACCAAATTATAAGGAGGCTGTTCTAGAGCTGAACGCATCAGATGACAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAGAAGAAAGTTACACTAACTCCTGGCCGACACAAAATAGTTATCTTGGATGAAGCTGATAGCATGACATCAGGAGCACAGCAAGCTTTGAGGCGAACAATGGAAATATATTCAAACACCACTCGTTTTGCTCTTGCTTGTAATACATCTTCGAAAATTATCGAGCCTATTCAGAGTAGATGTGCTATTGTTCGATTTTCAAGATTATCTGATCAAGAGATACTAAGTCGACTCATGGTGGTAGTAAAAGCAGAAAAGGTTCCATTTGTTCCGGAAGGTCTCGAAGCAATCATTTTCACAGCAGATGGTGATATGAGGCAGGCTCTGAATAACTTGCAAGCTACTTTCAGTGGATTCCGGTTTGTAAACCAAGACAATGTCTTCAAGGTTTGCGACCAACCTCATCCATTGCATGTAAAGAACATGGTCCGTAATGTTCTGGAGGGGAAATTTGACGATGCTTGTTCAGGTCTCAAGCAATTATATGACTTGGGTTATTCTCCCACTGATATAATCACTACTCTTTTCCGTATCATTAAAAACTACGACATGGCTGAGTATCTGAAATTGGAGTTCATGAAGGAAACGGGGTTTGCTCATATGAGAATCTGTGACGGTGTTGGTTCCTATCTTCAGCTTTGTGGTCTTCTTGCAAAGCTTTCTGTAGTCAGGGAAACTGCTAAAGCTGCATGA 1032 44.28 MASSSAPPSGGGGGGGSSSSSSYDIPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILSRLMVVVKAEKVPFVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSVVRETAKAA 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1778705 1781631 + Conep12aG0034100.1 Cone12ag0326 449170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0326 343 FunFam Replication factor C subunit 4 183 246 - -
Cone12ag0326 343 Pfam ATPase family associated with various cellular activities (AAA) 61 179 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone12ag0326 343 SMART AAA_5 57 183 IPR003593 GO:0016887(InterPro)
Cone12ag0326 343 FunFam replication factor C subunit 2 247 339 - -
Cone12ag0326 343 Gene3D - 183 246 - -
Cone12ag0326 343 MobiDBLite consensus disorder prediction 1 24 - -
Cone12ag0326 343 FunFam Replication factor C subunit 4 19 182 - -
Cone12ag0326 343 CDD AAA 40 177 - -
Cone12ag0326 343 Gene3D - 18 182 IPR027417 -
Cone12ag0326 343 SUPERFAMILY post-AAA+ oligomerization domain-like 246 337 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone12ag0326 343 CDD HLD_clamp_RFC 182 244 IPR047854 -
Cone12ag0326 343 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 26 336 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone12ag0326 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 245 IPR027417 -
Cone12ag0326 343 Gene3D - 247 339 - -
Cone12ag0326 343 Pfam Replication factor C C-terminal domain 247 332 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0326 Cone-Chr12:1778705 Cone17ag1292 Cone-Chr17:9251825 8.95E-65 dispersed
Cone12ag0326 Cone-Chr12:1778705 Cone8ag0325 Cone-Chr8:1872391 9.41E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0326 K10755 - csv:101208984 615.92