Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0326 | ATGGCTTCGTCATCTGCTCCACCTTCCGGAGGCGGCGGAGGCGGCGGAAGCAGCAGCAGCAGTAGCTATGATATTCCTTGGGTTGAGAAGTACCGGCCGAGCAAAGTCGCCGACATAGTGGGCAATGAAGACGCCGTCTCAAGGCTCCAAGTCATTGCTCGCGACGGAAACATGCCTAATCTCATCTTAGCTGGGCCTCCTGGAACTGGTAAAACCACTAGTATACTAGCTCTTGCACATGAGCTTTTGGGACCAAATTATAAGGAGGCTGTTCTAGAGCTGAACGCATCAGATGACAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCTCAGAAGAAAGTTACACTAACTCCTGGCCGACACAAAATAGTTATCTTGGATGAAGCTGATAGCATGACATCAGGAGCACAGCAAGCTTTGAGGCGAACAATGGAAATATATTCAAACACCACTCGTTTTGCTCTTGCTTGTAATACATCTTCGAAAATTATCGAGCCTATTCAGAGTAGATGTGCTATTGTTCGATTTTCAAGATTATCTGATCAAGAGATACTAAGTCGACTCATGGTGGTAGTAAAAGCAGAAAAGGTTCCATTTGTTCCGGAAGGTCTCGAAGCAATCATTTTCACAGCAGATGGTGATATGAGGCAGGCTCTGAATAACTTGCAAGCTACTTTCAGTGGATTCCGGTTTGTAAACCAAGACAATGTCTTCAAGGTTTGCGACCAACCTCATCCATTGCATGTAAAGAACATGGTCCGTAATGTTCTGGAGGGGAAATTTGACGATGCTTGTTCAGGTCTCAAGCAATTATATGACTTGGGTTATTCTCCCACTGATATAATCACTACTCTTTTCCGTATCATTAAAAACTACGACATGGCTGAGTATCTGAAATTGGAGTTCATGAAGGAAACGGGGTTTGCTCATATGAGAATCTGTGACGGTGTTGGTTCCTATCTTCAGCTTTGTGGTCTTCTTGCAAAGCTTTCTGTAGTCAGGGAAACTGCTAAAGCTGCATGA | 1032 | 44.28 | MASSSAPPSGGGGGGGSSSSSSYDIPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILSRLMVVVKAEKVPFVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSVVRETAKAA | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1778705 | 1781631 | + | Conep12aG0034100.1 | Cone12ag0326 | 449170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0326 | 343 | FunFam | Replication factor C subunit 4 | 183 | 246 | - | - | |
Cone12ag0326 | 343 | Pfam | ATPase family associated with various cellular activities (AAA) | 61 | 179 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cone12ag0326 | 343 | SMART | AAA_5 | 57 | 183 | IPR003593 | GO:0016887(InterPro) | |
Cone12ag0326 | 343 | FunFam | replication factor C subunit 2 | 247 | 339 | - | - | |
Cone12ag0326 | 343 | Gene3D | - | 183 | 246 | - | - | |
Cone12ag0326 | 343 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cone12ag0326 | 343 | FunFam | Replication factor C subunit 4 | 19 | 182 | - | - | |
Cone12ag0326 | 343 | CDD | AAA | 40 | 177 | - | - | |
Cone12ag0326 | 343 | Gene3D | - | 18 | 182 | IPR027417 | - | |
Cone12ag0326 | 343 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 246 | 337 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Cone12ag0326 | 343 | CDD | HLD_clamp_RFC | 182 | 244 | IPR047854 | - | |
Cone12ag0326 | 343 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 26 | 336 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Cone12ag0326 | 343 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 23 | 245 | IPR027417 | - | |
Cone12ag0326 | 343 | Gene3D | - | 247 | 339 | - | - | |
Cone12ag0326 | 343 | Pfam | Replication factor C C-terminal domain | 247 | 332 | IPR013748 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0326 | Cone-Chr12:1778705 | Cone17ag1292 | Cone-Chr17:9251825 | 8.95E-65 | dispersed | |
Cone12ag0326 | Cone-Chr12:1778705 | Cone8ag0325 | Cone-Chr8:1872391 | 9.41E-107 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0326 | K10755 | - | csv:101208984 | 615.92 |