Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0334 ATGGCTTCTAATTTCTTTCACCCATGGAGCTTATTCTTCGTGTCGTTGATATTGATGATCTTCGGCAAACCAACGGCAGCTGCATTCCGACCAAGCCCATGGAAGCTGGCCCACGCCACGTTTTACGGCGATGAGACTGCCTCTGAGACAATGGGAGGAGCTTGTGGGTATGGAAATTTGTTCGTAAACGGATATGGAACAGACACTGCTGCTTTGAGTTCAACACTTTTTAACAACGGATATGCATGTGGGACCTGCTACCAGATCAAATGTTACCAATCAAAAGCATGTTACAACATCCCTTACACGACGGTCACGGCCACCAACATATGCCCGCCGAATTGGTCGCAAGACTCCAATGCTGGTGGCTGGTGCAACCCGCCTAGGACCCACTTCGATATGTCTAAGCCTGCCTTCATGAAAATCGCATGGTGGAAAGCCGGAATCGTCCCAGTTCTTTACCGCAGAGTCCCTTGCGTGAGGAAGGGCGGGTTAAGATTCAGTTTCCAAGGAAACGGGTACTGGCTATTGGTGTACGTGATGAATGTCGGCGGGGGCGGGGACATTTCGAGCATAGCGGTGAAGGGAACCAAGACAGGTTGGATAAATATGAGACACAACTGGGGAGCTTCATATCAAGCATTTGCTACCCTTGGTGGCCAAGCTCTCTCTTTCAGGGTCACTTCCTATGCTTCTAGAGAGACTGTTTATGCATGGAATGTTGCTCCTGCTTATTGGCAAACAGGATCAACTTATCAGGCAAGAGTAAATTTCCGATGA 780 48.97 MASNFFHPWSLFFVSLILMIFGKPTAAAFRPSPWKLAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSKACYNIPYTTVTATNICPPNWSQDSNAGGWCNPPRTHFDMSKPAFMKIAWWKAGIVPVLYRRVPCVRKGGLRFSFQGNGYWLLVYVMNVGGGGDISSIAVKGTKTGWINMRHNWGASYQAFATLGGQALSFRVTSYASRETVYAWNVAPAYWQTGSTYQARVNFR 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1836858 1837867 - Conep12aG0034900.1 Cone12ag0334 449178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0334 259 CDD DPBB_EXPA_N 33 159 - -
Cone12ag0334 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cone12ag0334 259 Gene3D - 165 259 IPR036749 -
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cone12ag0334 259 PANTHER EXPANSIN-A15 18 254 IPR002963 GO:0009664(InterPro)
Cone12ag0334 259 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cone12ag0334 259 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Cone12ag0334 259 SMART dpbb_1 69 154 IPR007112 -
Cone12ag0334 259 Gene3D - 20 159 IPR036908 -
Cone12ag0334 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Cone12ag0334 259 Pfam Lytic transglycolase 69 154 IPR009009 -
Cone12ag0334 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0334 Cone-Chr12:1836858 Cone18ag0444 Cone-Chr18:2169890 2.41E-91 dispersed
Cone12ag0334 Cone-Chr12:1836858 Cone6ag0734 Cone-Chr6:3709224 7.57E-157 wgd
Cone12ag0334 Cone-Chr12:1836858 Cone8ag0340 Cone-Chr8:1951447 1.16E-191 wgd
Cone12ag0334 Cone-Chr12:1836858 Cone9ag0738 Cone-Chr9:3513641 2.09E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0334 - - - 0.0