Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0347 ATGGATCATTCCCATTCTCTTCCGCCTCCATTTCACACAAAAGATTACCATCTACAACATCAGTTCAACCACCACCAACAACAGAATTGCGAGGAAGAGCAAAGCGGTAGTAGTGGACTAAGCCGTGCCCAGAAACGTGAAAGAGATGACAATACCAACAGTGGCAATCATCATCATCAAGGTGGTAATGGTATCCCCGGTGGGTCTGGTGAAGAAGAAAGCACTGGAAGGCCTCGTGGTAGGCCTGCTGGATCCAAGAACAAGCCCAAACCACCCATCATCATCACACGTGATAGTGCAAACGCCCTCCGCACCCACATGATTGAGGTCACTGACGGGTGCGATATCGTCGAAAGTGTGGCCACTTTCACCAGGCGGCGACAGAGAGGAGTGTGCATTATGAGCGGGACCGGAACAGTTGCAAACGTGACATTAAGACAACCGGCATCACCAGGGGCAATAGTGACATTACATGGCCGCTTCGAGATCCTATCCCTAGCTGGGTCGTTTTTACCACCACCAGCTCCGCCGGAAGCAACAGGGTTGACCATATATCTGGCTGGGGGACAAGGCCAGGTGGTGGGAGGGAGTGTAGTCGGGACGTTGATGGCGTCAGGACCGGTGGTGATTATGGCAGCATCATTCAGTAATGCTGCTTATGAGCGGCTTCCTCTGGAGGAGGATGAGGGTCAAGGGCTAGCAATGCAAGGTGGTGGCTCAATTGGGTCACCTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGCCAACAACAACAAACACCGCATCAACTTTTAGGGGATGCAAGTGGGCCTTTGTATCATGGAATGCCTCAAAATCTACTCAACTCAATTCAAATTCCAAATGAAGCAGCTTATTGGGCCACAGGTCGGCCTCCATACTGA 903 52.05 MDHSHSLPPPFHTKDYHLQHQFNHHQQQNCEEEQSGSSGLSRAQKRERDDNTNSGNHHHQGGNGIPGGSGEEESTGRPRGRPAGSKNKPKPPIIITRDSANALRTHMIEVTDGCDIVESVATFTRRRQRGVCIMSGTGTVANVTLRQPASPGAIVTLHGRFEILSLAGSFLPPPAPPEATGLTIYLAGGQGQVVGGSVVGTLMASGPVVIMAASFSNAAYERLPLEEDEGQGLAMQGGGSIGSPGGGGGGGGGGGQQQQTPHQLLGDASGPLYHGMPQNLLNSIQIPNEAAYWATGRPPY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1886783 1887685 - Conep12aG0036200.1 Cone12ag0347 449191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0347 300 CDD DUF296 104 187 IPR005175 -
Cone12ag0347 300 ProSiteProfiles PPC domain profile profile. 100 239 IPR005175 -
Cone12ag0347 300 MobiDBLite consensus disorder prediction 231 271 - -
Cone12ag0347 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 300 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone12ag0347 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 216 IPR005175 -
Cone12ag0347 300 PIRSF ESCAROLA 12 300 IPR014476 GO:0003680(InterPro)
Cone12ag0347 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 229 - -
Cone12ag0347 300 MobiDBLite consensus disorder prediction 22 41 - -
Cone12ag0347 300 MobiDBLite consensus disorder prediction 1 94 - -
Cone12ag0347 300 Gene3D - 103 236 - -
Cone12ag0347 300 FunFam AT-hook motif nuclear-localized protein 103 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0347 Cone-Chr12:1886783 Cone9ag0727 Cone-Chr9:3470444 1.09E-114 dispersed
Cone12ag0347 Cone-Chr12:1886783 Cone12ag0349 Cone-Chr12:1934171 1.25E-21 proximal
Cone12ag0347 Cone-Chr12:1886783 Cone8ag0353 Cone-Chr8:2019529 1.18E-154 wgd
Cone12ag0347 Cone-Chr12:1886783 Cone9ag0724 Cone-Chr9:3455326 2.29E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0347 - - - 0.0