Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0349 ATGGAGGGAAGGGAAGTTGGTGTGAGTAGTGGGGTTACAGTTGTGGAATCAGATGCTCCCTCGGATTACCACATGGCTCCGAGGACGGAAAATCCGGTATCCACTGGCGGATCAGGTCCGCCGCTGACATCGGTGGCGCCGCCTCAATTAGGTGTGACTTCGCTGCCGGGAGGGGCAGATTTCTCAGTTCCTAGTAAGAAAAAAAGGGGTAGGCCCCGCAAATACGGGCCGGACGGTAGTGTTGCTAAGGCACTTTCCCCGAAGCCGATATCATCATTGGTCCCACCTCCGGTGATCGACTTCTCATCGGAGAAACGGGGAAAGGTCCGTCCCGCAAGCTCATTGAGCAAAACCAAGCATGAGATGGAGAACTTAGGGGAATGGGTTGCTTGTTCTGTTGGTGCCAATTTCACACCCCATATCATAAACGTCAATACCGGAGAGGATGTGACAATGAAGATTATATCTTTCTCTCAACAAGGGCCCCGAGCTATTTGCATTCTATCTGCAAACGGTGTGATTTCAAGTGTAACTCTTCATCAGCCGGATTCTTCCGGGGGAACTTTGACATATGAGGGTCGTTTCGAAATATTGTCCTTATCTGGCTCCTTCATACCAAGTGATAGTGGAGGAACTAGGAGCCGATCCGGTGGGATGAGTGTATCTTTAGCGAGCTCGGATGGTCGAGTTGTTGGTGGAGGAGTAGCGGGCCTACTAGTAGCTGCAAGTCCCTTACAGGTTGTAGTAGGCAGTTTTCTGTCGGGTAACCAGCATGAGCAGAAACCGAAAAAACAGAAACATGATAACACCGAATCAACCACCACAACACCTACAGCTACAGTTCCGATTTCAAGCGCCGATCCAACGTCAACCATATTGACCTCCTCCTCTTCCTTCCGAGTTGATAATTGGACCTCATTGCCTTCCGATTCAAGAGATAAATCCACTGATATTAATATATCTTTCCCCAGTGATTCTTAG 981 49.34 MEGREVGVSSGVTVVESDAPSDYHMAPRTENPVSTGGSGPPLTSVAPPQLGVTSLPGGADFSVPSKKKRGRPRKYGPDGSVAKALSPKPISSLVPPPVIDFSSEKRGKVRPASSLSKTKHEMENLGEWVACSVGANFTPHIINVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLHQPDSSGGTLTYEGRFEILSLSGSFIPSDSGGTRSRSGGMSVSLASSDGRVVGGGVAGLLVAASPLQVVVGSFLSGNQHEQKPKKQKHDNTESTTTTPTATVPISSADPTSTILTSSSSFRVDNWTSLPSDSRDKSTDINISFPSDS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1934171 1936992 + Conep12aG0036400.1 Cone12ag0349 449193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0349 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Cone12ag0349 326 MobiDBLite consensus disorder prediction 271 289 - -
Cone12ag0349 326 MobiDBLite consensus disorder prediction 255 289 - -
Cone12ag0349 326 ProSiteProfiles PPC domain profile profile. 134 274 IPR005175 -
Cone12ag0349 326 MobiDBLite consensus disorder prediction 31 50 - -
Cone12ag0349 326 FunFam AT-hook motif nuclear-localized protein 1-like 139 271 - -
Cone12ag0349 326 Gene3D - 139 271 - -
Cone12ag0349 326 MobiDBLite consensus disorder prediction 303 326 - -
Cone12ag0349 326 MobiDBLite consensus disorder prediction 1 89 - -
Cone12ag0349 326 CDD DUF296 138 229 IPR005175 -
Cone12ag0349 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 291 IPR039605 GO:0003680(InterPro)
Cone12ag0349 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0349 Cone-Chr12:1934171 Cone8ag0357 Cone-Chr8:2067946 1.11E-200 dispersed
Cone12ag0347 Cone-Chr12:1886783 Cone12ag0349 Cone-Chr12:1934171 1.25E-21 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0349 - - - 0.0