Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0372 ATGTCATCATCGTCCTCACCTCCTCCTCCTACCTTGTCTCAACTGGATGACCAATTCCTTCCTCCCTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTGAGTGTCCCTGGCACGAGCTTGTTTAAGACTGTTACGGTGAGATGTGGACACTGCTCAACCCTCTTGCCAGTGAACATGCGGGGACTGCTTTTGCCATCGCCTAATCAATTTCACCAGCTCACTCACTCTTTCTTCAACCCTAATTCTCATAATATTCTGGAAGAGATGCCAAATCCAACCTCAAGCTTTATGATCAACCAAACAAACATTGGAAATGATCCCTTGGCTAATTATTTGAGGCCACCTCGAGTTGTACCTGATGATGAACCTCCAAGAGTTCCTCCCATCATAAACAGACCTCCCGAGAAGAGACAACGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATTCCTGACCAGACTGTGAAAAAGACAAACCTGCGTCAGGAAGGAGATCGTGATCATGTGCTGATGAAGGATGCAGGGTTCTTTGCTTCGGCTAATGTGGGTGTGTCCCACTTCTGA 693 48.05 MSSSSSPPPPTLSQLDDQFLPPSEQLCYVHCNICDTVLAVSVPGTSLFKTVTVRCGHCSTLLPVNMRGLLLPSPNQFHQLTHSFFNPNSHNILEEMPNPTSSFMINQTNIGNDPLANYLRPPRVVPDDEPPRVPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLIPDQTVKKTNLRQEGDRDHVLMKDAGFFASANVGVSHF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2132460 2135134 - Conep12aG0038700.1 Cone12ag0372 449216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0372 230 MobiDBLite consensus disorder prediction 124 144 - -
Cone12ag0372 230 FunFam Axial regulator YABBY 137 208 - -
Cone12ag0372 230 Gene3D High mobility group box domain 137 188 IPR036910 -
Cone12ag0372 230 SUPERFAMILY HMG-box 130 185 IPR036910 -
Cone12ag0372 230 PANTHER PROTEIN YABBY 6-RELATED 22 201 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone12ag0372 230 CDD HMG-box_SF 146 182 - -
Cone12ag0372 230 Pfam YABBY protein 22 192 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0372 Cone-Chr12:2132460 Cone4ag0666 Cone-Chr4:3264688 4.82E-50 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone6ag0698 Cone-Chr6:3531312 3.38E-93 wgd
Cone12ag0372 Cone-Chr12:2132460 Cone8ag0386 Cone-Chr8:2354763 4.74E-150 wgd
Cone12ag0372 Cone-Chr12:2132460 Cone9ag0698 Cone-Chr9:3356189 1.45E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44434 PF00759 Glyco_hydro_9 1.60E-141 CL0059 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0372 K25796 - csv:101214748 324.324