Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0384 ATGGCTTCTTACCTTAATACTTTCTTCTTCATCTTCATTTCCACGCTCATTTGGTCACTATCTGATGCAGGATTTCCAACGATTTCCAGCTCAACAACAACTAACCACTCAACCAACTCGTCCGCCACTTATTATAAGCTTCCACATCACAAGTGGGTCGGATCTATCGGCTACCACCTCATCACGGTCGATATCAACGGCACCGGAGACTTCCATTCCGTCCAAGCTGCAGTAGATGCAGTCCGGGATTACAACAGAAAAGTCGTCGTCATTAAAATCGGCCCCGGTTATTACAAAGAGAAGGTAGTGGTTCCGCCTACGAAGCCGTACATAACATTTCAAGGGAGCGGTAGAGACGTGACGGTAATCGAATGGCATGATCGGGCCTTAGATCGAGGCGCTAACGGTCAACAGTTGCGTACTTACCGAACAGCTTCTGTTACTGTCTACGCTAATTACTTCTCTGCTAGAAACATCAGCTTCAAGAATACGGCACCGGCACCGTTACCAGGAATGCAAGGATGGCAAGCGGCGGCATTTCGGATATCGGGCGACAAGGCATATTTCTCGGGGTGTGGATTCTATGGAGCTCAGGACACACTCTGTGACGATGCCGGAAGACATTACTTCAAGAATTGTTACATTGAGGGCTCCATTGACTTTATCTTTGGAAATGGCCGCTCAATGTATAAGGACTGCGATCTGCACTCCATAGCTACGAGGTTCGGTTCCATAGCGGCCCAAGATAGAAAGTCACCGGAAGAGAAAACGGGCTTTGCTTTTGTGGGATGCAAGGTAACGGGTACAGGACCTCTATATCTGGGCCGAGCCATGGGCCAATACTCTAGGATTGTCTACTCTTACACTTACTTTGATGACGTGGTCGCACATGGTGGATGGGATGACTGGGACCACAAGAACAAGACCGTGTTTTTCGCTGTGTACAAGTGCTGGGGCCCAGGGGCTGCTGCGGCCCGTGGAGTATCATGGGCCAGAGAGCTAGACTTCAGCACGGCCCATCCATTCCTTAGAAAGAGCTTTGTCAATGGCAGGCACTGGATTGCACCCTCAGATGCTTAA 1080 49.54 MASYLNTFFFIFISTLIWSLSDAGFPTISSSTTTNHSTNSSATYYKLPHHKWVGSIGYHLITVDINGTGDFHSVQAAVDAVRDYNRKVVVIKIGPGYYKEKVVVPPTKPYITFQGSGRDVTVIEWHDRALDRGANGQQLRTYRTASVTVYANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKNCYIEGSIDFIFGNGRSMYKDCDLHSIATRFGSIAAQDRKSPEEKTGFAFVGCKVTGTGPLYLGRAMGQYSRIVYSYTYFDDVVAHGGWDDWDHKNKTVFFAVYKCWGPGAAAARGVSWARELDFSTAHPFLRKSFVNGRHWIAPSDA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2206079 2208206 + Conep12aG0039900.1 Cone12ag0384 449228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0384 359 SUPERFAMILY Pectin lyase-like 60 356 IPR011050 -
Cone12ag0384 359 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Cone12ag0384 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 355 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone12ag0384 359 Gene3D - 59 358 IPR012334 -
Cone12ag0384 359 FunFam Pectinesterase 57 356 - -
Cone12ag0384 359 Pfam Pectinesterase 61 350 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0384 Cone-Chr12:2206079 Cone4ag0965 Cone-Chr4:8367654 6.01E-108 dispersed
Cone1ag1095 Cone-Chr1:55447486 Cone12ag0384 Cone-Chr12:2206079 3.08E-38 wgd
Cone12ag0384 Cone-Chr12:2206079 Cone5ag0802 Cone-Chr5:3450694 4.43E-43 wgd
Cone12ag0384 Cone-Chr12:2206079 Cone8ag0400 Cone-Chr8:2461221 4.25E-250 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0384 - - - 0.0