Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0395 ATGAAAGAAGCATCTATTCTCAACTCCGAGTCTCAATCCATCTCTTCCTCTTCTTATTCTTCTTCTTCAACCACCACCTCCTCTCATGAAAAATGTTCCAACAAAAGCTCTCGAAAACCCAAAACCTGTAATTTGGGAAGCAAGAAAAATAAGCAAAGTAAAAGGGATCAAAGTAATGGTCAAGGGTCGAAGCACCCGACATATCGCGGGGTAAGAATGAGGCAATGGGGAAAATGGGTGTCTGAAATCCGAGAACCGAGAAAAAAATCCCGAATATGGCTCGGGACTTTCCCGACACCGGAAATGGCTGCTCGGGCCCACGACGTGGCAGCCCTAACGATCAAGGGCCGCTCTGCTCACCTCAATTTCCCTCAGCTTGCTCATAAGCTCCCTCGTCCCACTACCACTTCACCTAAAGATATTCAAGCGGCTGCAGCCAAAGCCGCTACCTATTATAATAATAATAATAATGACAATACTATTTATCAAAAAAACGACATTGAAGCTGGAGCCAAAACTGAAGCTGAAGCCGGAAATGAGCCGAGCCGAGCCGAATTATTTGACTCATCAAGTGGTTCACCATTAATTACAGAAGATACTTATGATGACACATTTTATGACCTTCCTGATCTCATGATTGATGTAAATGATCATCAAATTGAGGAGTGTTGCGGCTTGTCGTGGCTGCAGCTAGCTGAAGGGGTCGAACCGATAGATACATGGCTCCGGAGTATTGAAGAGCCTCTTTTATGGTAA 756 44.58 MKEASILNSESQSISSSSYSSSSTTTSSHEKCSNKSSRKPKTCNLGSKKNKQSKRDQSNGQGSKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALTIKGRSAHLNFPQLAHKLPRPTTTSPKDIQAAAAKAATYYNNNNNDNTIYQKNDIEAGAKTEAEAGNEPSRAELFDSSSGSPLITEDTYDDTFYDLPDLMIDVNDHQIEECCGLSWLQLAEGVEPIDTWLRSIEEPLLW 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2301242 2302281 - Conep12aG0041000.1 Cone12ag0395 449239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0395 251 CDD AP2 68 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 MobiDBLite consensus disorder prediction 1 31 - -
Cone12ag0395 251 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 Pfam AP2 domain 67 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Cone12ag0395 251 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677(InterPro)
Cone12ag0395 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 216 IPR051032 -
Cone12ag0395 251 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0395 251 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0395 Cone-Chr12:2301242 Cone15ag0529 Cone-Chr15:2592911 2.98E-47 dispersed
Cone12ag0395 Cone-Chr12:2301242 Cone6ag0657 Cone-Chr6:3328609 1.22E-34 wgd
Cone12ag0395 Cone-Chr12:2301242 Cone9ag0662 Cone-Chr9:3150302 1.79E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44438 PF00067 p450 3.40E-63 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0395 - - - 0.0