Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0399 ATGTATATAGAGGAAGTGAAGGAAGGGGATGGGGCGGAGAATAGGGAAGGAGGAAAGTCATCTGTTGGAGATTGTGATTTGAGAAGCCATAGAATCGTTGTGTCCAATACGAAAAGGATTTTGGTTGGAGCTGGAGCTAGGGCGCTCTTTTATCCAACTCTACTATACAATGTTGTCAGGAACAACCTTCAGGTTGAATTCCGATGGTGGGATAGGGTTGATGAGTTTATACTGTTAGGTGCTGTTCCATTCCCTTCTGATGTTCCTCGCTTAAAGGAACTTGGGGTTGGAGGAGTGATTACACTGAATGAACCATATGAGACCTTGGTTCCTACAAATCTGTATCATGCTCTTGACATTGATCATCTTGTGATCCCAACAAGGGACTATTGTTTTGCACCTTCAATGAGTGACATTACCCGCGCGGTAGACTTTATTCACGAAAAATCATTGGGTGGGCAAACTACCTATGTCCACTGCAAAGCTGGACGAGGACGCAGCACAACTGTTGTAATATGCTACCTGGTGCAGTACAAGCAGATTACACCAGATGCTGCATATGATTATCTAAGGTCAATTAGACGAAGGGTGCTTTTAGCGTCTTCCCAGTGGCAGGCTGTCCAAGAATTCTACCATCGTAAGGTGAAAAAGACACCTATTTTCCACCACCAAATGACTGATCTGCTTATGAAAATGCCGAGATTGGAACAAGTCTCACAAGATGTCTCGTTTGACGATAGCTCCGTAGTTCTTGTAACCAAATCCGATCTAGAAGGATATGAAAACGATCTTTGTTCTGTTGGAAATGAAATAAGGGCAGATGTAAGTGTCATATACCGATTTAGGGTAGCTGGTCAGTCTGCTCTGGGTAGGATATCATGCCTATGGGTTCGTTGCCGTGGGGAACACCAGAATATTCCCAGGGAGAAGCTAAGTAGGGAAGGTAGCTGCTCAATCAGGACCACTCATCTGGAAGGTATCGGTGTGGATATTCAAGTGTACTGA 1005 44.38 MYIEEVKEGDGAENREGGKSSVGDCDLRSHRIVVSNTKRILVGAGARALFYPTLLYNVVRNNLQVEFRWWDRVDEFILLGAVPFPSDVPRLKELGVGGVITLNEPYETLVPTNLYHALDIDHLVIPTRDYCFAPSMSDITRAVDFIHEKSLGGQTTYVHCKAGRGRSTTVVICYLVQYKQITPDAAYDYLRSIRRRVLLASSQWQAVQEFYHRKVKKTPIFHHQMTDLLMKMPRLEQVSQDVSFDDSSVVLVTKSDLEGYENDLCSVGNEIRADVSVIYRFRVAGQSALGRISCLWVRCRGEHQNIPREKLSREGSCSIRTTHLEGIGVDIQVY 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2339405 2342217 + Conep12aG0041400.1 Cone12ag0399 449243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0399 334 SMART dsp_5 72 213 IPR020422 GO:0006470(InterPro)
Cone12ag0399 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311(InterPro)
Cone12ag0399 334 Pfam Dual specificity phosphatase, catalytic domain 92 211 IPR000340 GO:0016311(InterPro)
Cone12ag0399 334 FunFam Dual specificity phosphatase domain protein 69 216 - -
Cone12ag0399 334 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 286 - -
Cone12ag0399 334 Gene3D Protein tyrosine phosphatase superfamily 69 218 IPR029021 -
Cone12ag0399 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 214 IPR029021 -
Cone12ag0399 334 CDD PTPMT1 69 211 IPR044596 GO:0004721(InterPro)
Cone12ag0399 334 MobiDBLite consensus disorder prediction 1 22 - -
Cone12ag0399 334 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 216 IPR020422 GO:0006470(InterPro)
Cone12ag0399 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 137 205 IPR000387 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0399 Cone-Chr12:2339405 Cone4ag0974 Cone-Chr4:8426607 1.08E-97 dispersed
Cone12ag0399 Cone-Chr12:2339405 Cone8ag0418 Cone-Chr8:2586147 1.04E-223 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0399 - - - 0.0