Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0404 ATGGAGAACATAGAGTTATCTGCGCTGGAGCATATCAAGAAGCATCTTCTTGGAGAATTCTCACCGGTCATGAAGAACTGTTATGATGAACTCAACAATTCCGACTCCAATTTTCTCTTAGGTGAATTATTGTCCAGGGAAGTGAAATCGGACTCCACGACCTCTAGATCTTATGATGTTTCTTCGTGCTCCAAAGCATCTAGCTCTCATGAATCTTTAATCGCCATCTCTGACTACTTCGACTCCACTGTACTGCTCGATTTCTCTTCGAATCTTGTAACATTCGACAAAAAACGAAGCGTTTTCTCTGAATGTGATTCGAAACCTCATGTAATTGACCTTACGACGCCAAAATCTTCTGATTCGAGCTCACGAACGAGTAGTAATAACTCGTTTGAGTTCGAATCCAAGGTGTTAGCTACTCAAAATGGAAGCTCAATTTCCAGATCTAACAACATCAGCTCGTTCGAGTTCGAATCGAAGCCTCAAGTTTTCGACGGAGCAGCAGCGAAGAACTTGAATCGGAAACCGTCCAATTTGAAGATATCGCCTCCTAACAGAACCGAATGGATACAGTTTTCTAAACCGGATCCGGTTCAGATAAGTTCAGGTATGGTTGTGGAGGAGATCAGTAAGCACTACCGAGGTGTCCGACGACGGCCGTGGGGAAAGTTCGCTGCGGAGATCCGTGACCCGAACCGCCGCGGGTCTAGAGTTTGGCTTGGAACGTTCGAGACGGCAATCGAAGCCGCTAGAGCCTACGATAGAGCCGCGTTCAAGCTTCGCGGCTCGAAAGCCATACTCAACTTCCCGCTGGAAGTTAGACTGTATAGCTCAGAATCCGACGGCGTTCGGAAACGGCAGAGGGAGGAGAAACCGGAGGAAGTAAAGCAGGTGAAGAAGGAGAAGACGGAGGAGACGGGGGTTGATGTTGTCAGTTATCTTCGAGATATTCCATTAACGCCGTCAAGCTGGATACCCGTTTGGGATAATGATGTGAAGGGTGTATTTAACGTTCCGCCGTTATCTCCGTTATCACCCCACCTGGCTTTCAGTTCTAATCAGCTTATGGTTGTGTGTGGAACAACCTAA 1092 46.98 MENIELSALEHIKKHLLGEFSPVMKNCYDELNNSDSNFLLGELLSREVKSDSTTSRSYDVSSCSKASSSHESLIAISDYFDSTVLLDFSSNLVTFDKKRSVFSECDSKPHVIDLTTPKSSDSSSRTSSNNSFEFESKVLATQNGSSISRSNNISSFEFESKPQVFDGAAAKNLNRKPSNLKISPPNRTEWIQFSKPDPVQISSGMVVEEISKHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKLRGSKAILNFPLEVRLYSSESDGVRKRQREEKPEEVKQVKKEKTEETGVDVVSYLRDIPLTPSSWIPVWDNDVKGVFNVPPLSPLSPHLAFSSNQLMVVCGTT 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2370752 2372104 - Conep12aG0041900.1 Cone12ag0404 449248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0404 363 SMART rav1_2 213 279 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 Pfam AP2 domain 213 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 CDD AP2 212 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 PRINTS Ethylene responsive element binding protein signature 253 273 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 Gene3D AP2/ERF domain 212 273 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 FunFam Ethylene-responsive transcription factor 2 212 273 - -
Cone12ag0404 363 SUPERFAMILY DNA-binding domain 213 273 IPR016177 GO:0003677(InterPro)
Cone12ag0404 363 ProSiteProfiles AP2/ERF domain profile. 213 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0404 363 PANTHER DNA-BINDING DOMAIN 129 294 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone12ag0404 363 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0404 Cone-Chr12:2370752 Cone6ag0650 Cone-Chr6:3287997 8.68E-67 dispersed
Cone12ag0404 Cone-Chr12:2370752 Cone12ag0405 Cone-Chr12:2381471 1.76E-21 tandem
Cone12ag0404 Cone-Chr12:2370752 Cone5ag0766 Cone-Chr5:3283128 5.85E-26 wgd
Cone12ag0404 Cone-Chr12:2370752 Cone6ag0649 Cone-Chr6:3279735 1.07E-30 wgd
Cone12ag0404 Cone-Chr12:2370752 Cone8ag0420 Cone-Chr8:2610186 1.09E-185 wgd
Cone12ag0404 Cone-Chr12:2370752 Cone9ag0653 Cone-Chr9:3110330 1.85E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44440 PF07714 PK_Tyr_Ser-Thr 3.80E-25 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0404 K09286 - mdm:103432977 275.404