Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0405 ATGTACGGACAGAGCAACAGCAACAGTGGTAGCATTAGTAGTTTGGAAGAGTCTGATTTAGCTCTCCTGGATTCTGTTCGCCGGCACTTGCTCGGTGAATCTAAGGGTCAGTCGGAATATTATGCCAATCTAAGTCTTCCAGGACATAATTTATGTTCCTATCGGATGAATTTGCCCCAAAGTTGTAATCTCAATTTCTCGACTGTGAAATCGGAACCTGAGATTGTTTCAGATAGTAACGTGTTGAAGAAACCTGAGGCTCCAGCGAAACCGAAGCGTACTTTGAAAGTGGGCCCAGCTAGGGGATTGCATTACAGGGGGGTAAGACAACGGCTGTATGGAAAGTTTGCGGTAGAGATACGAGACCCGGCAAAAAATGGGACCACAGTTTGGTTGGGGACCTATGAGACAGCAGAAGATGCTGCATTGGATTATGACCGAGCTGCATACAGAATGCACGGCTCGAAGGCAGTACTTAACTTCCCACTGAGAATCAACTCCGGAGAACCAGAGCCAGTTAGAGTCGCCTCAAAACAGCCTTTATCCGAGAGTTCATCATCTTCTCCATTTGATAATAGACCGTTGAAGAGGCAGAACGAGCAGATGGGTTATGAACTTTTGGGTGCAGGGGGCGGTGAAAACAGCAATAAGCACGCATGGCGAGGAATTATGAATAAATGGGGCTGTAAAGAGTTGTTTGATCTTTTCTTCATTTGTTTTTTCCATTTAACTAAATTTGTTAGTTTTGAAAGAAAAAACTATTTCGATCGAAGTAACGAAGCAAATAATAATTAA 795 43.65 MYGQSNSNSGSISSLEESDLALLDSVRRHLLGESKGQSEYYANLSLPGHNLCSYRMNLPQSCNLNFSTVKSEPEIVSDSNVLKKPEAPAKPKRTLKVGPARGLHYRGVRQRLYGKFAVEIRDPAKNGTTVWLGTYETAEDAALDYDRAAYRMHGSKAVLNFPLRINSGEPEPVRVASKQPLSESSSSSPFDNRPLKRQNEQMGYELLGAGGGENSNKHAWRGIMNKWGCKELFDLFFICFFHLTKFVSFERKNYFDRSNEANNN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2381471 2382265 + Conep12aG0042000.1 Cone12ag0405 449249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0405 264 SMART rav1_2 104 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 Pfam AP2 domain 104 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 PANTHER DNA-BINDING DOMAIN 70 199 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone12ag0405 264 SUPERFAMILY DNA-binding domain 104 164 IPR016177 GO:0003677(InterPro)
Cone12ag0405 264 MobiDBLite consensus disorder prediction 178 195 - -
Cone12ag0405 264 Gene3D AP2/ERF domain 104 165 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 CDD AP2 104 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Cone12ag0405 264 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0405 264 MobiDBLite consensus disorder prediction 172 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0405 K09286 - - gmx:100817097 157.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0405 Cone-Chr12:2381471 Cone9ag0653 Cone-Chr9:3110330 3.23E-50 dispersed
Cone12ag0404 Cone-Chr12:2370752 Cone12ag0405 Cone-Chr12:2381471 1.76E-21 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g9 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0405 Cone6ag0649 Cone9ag0653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054381 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44441 PF07714 PK_Tyr_Ser-Thr 3.80E-25 CL0016 Cone TF