Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0406 ATGGCTACTTTAGATGAAAGCTCTTCTGCTAAGAGGTGGCTTCCTCTTGAAGCTAATCCTGATGTCATGAACCAGTTCCTTTGGGGTCTTGGGCTTCCAGAGAATGAGGCCGAGTGCAATGATGTCTATGGCTTGGATGAAGAGCTGTTGGAAATGGTCCCAAAGCCTGTGCTTGCTGTTCTTTTTCTTTATCCCTTAACAAAAGAGAGTGAAGAAGAAAGATTTCTGCAGAAAGACATAAAGGAACCTAGTGGTAGAGTTTATTTCATGAGACAGACTGTGGGAAATGCTTGTGGAACTATTGGACTTCTGCATGCCGTTGGGAATTTAACTTTAGAGATCAAGTTTTCCGATGGATCATTCTTGGATAACTTCTTTAAAGCTACTGCAAGCATGGATCCAATGGAGCGTGCGGTTTTTCTCGAGAATGACAGACAAATGGAAGTTGCTCATTCTATAGCAGCTACTGCTGGTGATACTGAGGCTTCCGATAATGTGGACACTCACTTTATCTGCTTTGCATGTGTTGATGGTGTTCTCTATGAGCTCGATGGCAGAAAGTTAGCGCCGATATCTCATGGGCCAACCTCACCGGAAACTTTATTAAAGGATGCAGTAAAAGTTATACAAAGCATGATACAGAAAAATCCCAACTCCCTCAACTTCAATGTCATTGCCATTTCGAAGAAATGA 693 42.42 MATLDESSSAKRWLPLEANPDVMNQFLWGLGLPENEAECNDVYGLDEELLEMVPKPVLAVLFLYPLTKESEEERFLQKDIKEPSGRVYFMRQTVGNACGTIGLLHAVGNLTLEIKFSDGSFLDNFFKATASMDPMERAVFLENDRQMEVAHSIAATAGDTEASDNVDTHFICFACVDGVLYELDGRKLAPISHGPTSPETLLKDAVKVIQSMIQKNPNSLNFNVIAISKK 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2382287 2385508 - Conep12aG0042100.1 Cone12ag0406 449250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0406 230 Gene3D - 7 230 IPR036959 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 214 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 CDD Peptidase_C12_UCH_L1_L3 13 227 - -
Cone12ag0406 230 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 180 190 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 164 175 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 92 109 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Cone12ag0406 230 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 9 229 IPR001578 GO:0004843(InterPro)|GO:0004843(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0016579(PANTHER)
Cone12ag0406 230 SUPERFAMILY Cysteine proteinases 11 229 IPR038765 -
Cone12ag0406 230 FunFam Ubiquitin carboxyl-terminal hydrolase 7 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0406 K05609 - - gmx:100816564 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0406 Cone-Chr12:2382287 Cone8ag0421 Cone-Chr8:2617659 9.48E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g6 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0421 Cone12ag0406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011817 1 2 1 1 1 0 2 0 0 1 0 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 0 1 1 0 29