Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0412 ATGGGTAAGCAAGGGCCTTGTTATCACTGCGGAGTTACAAGCACCCCTCTTTGGCGAAATGGGCCTCCCGATAAGCCCGTATTGTGCAATGCATGTGGGTCCCGGTGGAGGACGAAGGGAACACTGACAAACTACACTCCTCTACATGCTCGGACAGATCATGATGATTATGAAGAGCACAAGGTTTCCAAGGGGAAGAGCATAACTATAAGTAGAATCAAAGAGGTTAAGGTGCTTAAAAGAAAGTTGAATCATGAAACTGGAGTCATAGGAGGGTTTGTTTCAGATAGTTATCAGAGTTTCTCTAAGGCCATGGATGAAGATACAAGCAATAGGTCAAGTTCTGGATCGGCTATATCCAACTCTGAAAGTTGTGCACAATTTGGAAATGATGCAAGTGATTTGACAGGTCCAGCTCAGTCTACTGTATGGGACACCATGGTGCCTTCAAAGAAGAGGACATGTGTGAATCGTCCCAAGCAATCTTCTGTCGAAAAACTCACTAAAGAACTATATACCATTTGGTATGAACAACAACAACAATCTTCTAATTTCTCAGGATCTTCTGAAGAGGATCTACTTTTTGAGAGTGAAAGGCCTATGGTCTCAGTTGAGATAGGACATGGAAGTGTTCTCATCAGGCATCCGAGCTCCATAGCTCGAGAAGAAGAATCCGAAGCTAGCTCTCTATCAGTTGATAATAAAATGTTATCTACAAACGAGGCTTACTCTCATTCTGCTATAAATAAACTACATATTCTAGCAAACCATAACTCACCAATACGTGATGCTGATCTAAAAAATGTTCTGAACTTTGATGAGTTTATGAGTCAATTGACCCCTGAAGAGCAAAAAGAATTAATGAAGTATCTCCCCTGGATTGATTCTATTAAACCTCCCGACAGCCTCAAGGTCATGTTTGAGAGCCCTCAGTTGAATGAGAGTTTGACTTCCTTTCAGCAACTTCTTGCCGAGGGCGTCTTTGATAGCTCCCTCCCTGGGGTGAAAAAGGAAGACTGCAATTCCCTTAGAAGGCTTGCGTTATTCAACTTGTCGAAATCACAATGGGTTGAATGCTATAATCAACTTAAGGAACCTACGAGCAGTAGTAGAGGTTCTGACGTTTCAGGTGCTAATGGATTAACTCTGAACAGTCTCATGAATGGGAAGAGATCATATGATAGTGAAATTCAAAACTTTCCAGAGGCGAAGAAGACTACAATGAAGAGCCCGAAAAGGATGATGACGAAAGCTAGCTTTGATAACAAAGATTTAAGTGAAAGTGATGGTTCTTACTATAGTCCAAGAAGCTTATTTGCTTTGCCTACTGATGGAAGCTCCTCTCTCATGTTAGAATCCTTCCATTTTGTGGGTGAAACTTCTGATCAGGGACTTCTCTTGGATGTCAAGTCTAATAGTTCTTCATTCCTTCAAGCAGAGCTTCTTTGA 1449 41.61 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTDHDDYEEHKVSKGKSITISRIKEVKVLKRKLNHETGVIGGFVSDSYQSFSKAMDEDTSNRSSSGSAISNSESCAQFGNDASDLTGPAQSTVWDTMVPSKKRTCVNRPKQSSVEKLTKELYTIWYEQQQQSSNFSGSSEEDLLFESERPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKMLSTNEAYSHSAINKLHILANHNSPIRDADLKNVLNFDEFMSQLTPEEQKELMKYLPWIDSIKPPDSLKVMFESPQLNESLTSFQQLLAEGVFDSSLPGVKKEDCNSLRRLALFNLSKSQWVECYNQLKEPTSSSRGSDVSGANGLTLNSLMNGKRSYDSEIQNFPEAKKTTMKSPKRMMTKASFDNKDLSESDGSYYSPRSLFALPTDGSSSLMLESFHFVGETSDQGLLLDVKSNSSSFLQAELL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2429606 2433908 + Conep12aG0042700.1 Cone12ag0412 449256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0412 482 PANTHER OSJNBB0038F03.10 PROTEIN 1 332 IPR044589 -
Cone12ag0412 482 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Cone12ag0412 482 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 Gene3D - 248 347 IPR038108 -
Cone12ag0412 482 SMART GATA_3 1 53 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 Gene3D - 3 68 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone12ag0412 482 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 257 366 IPR044867 -
Cone12ag0412 482 Pfam Asx homology domain 249 330 IPR028020 -
Cone12ag0412 482 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 CDD ZnF_GATA 6 52 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 MobiDBLite consensus disorder prediction 405 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0412 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0412 Cone-Chr12:2429606 Cone6ag0635 Cone-Chr6:3216648 4.04E-191 wgd
Cone12ag0412 Cone-Chr12:2429606 Cone9ag0640 Cone-Chr9:3054672 1.41E-192 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1134 . 87 384 C2C2-Gata Transcription Factor Family AT5G25830 50.8 5.8e-68 255.4
Cone20ag0589 . 24 318 C2C2-Gata Transcription Factor Family AT5G25830 51.9 7.6e-68 255.0
Cone14ag0515 . 1 241 C2C2-Gata Transcription Factor Family AT2G45050 54.3 8.5e-46 181.4
Cone15ag0541 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 50.2 3.2e-52 202.6
Cone14ag0515 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 53.6 2.8e-48 189.5
Cone6ag0635 . 1 510 C2C2-Gata Transcription Factor Family AT4G17570 54.3 4.7e-133 472.2
Cone9ag0640 . 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.6 1.0e-132 471.1
Cone12ag0412 . 1 482 C2C2-Gata Transcription Factor Family AT4G17570 51.1 1.7e-119 427.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44442 PF03479 PCC 1.60E-25 CL0615 Cone TF