Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0412 ATGGGTAAGCAAGGGCCTTGTTATCACTGCGGAGTTACAAGCACCCCTCTTTGGCGAAATGGGCCTCCCGATAAGCCCGTATTGTGCAATGCATGTGGGTCCCGGTGGAGGACGAAGGGAACACTGACAAACTACACTCCTCTACATGCTCGGACAGATCATGATGATTATGAAGAGCACAAGGTTTCCAAGGGGAAGAGCATAACTATAAGTAGAATCAAAGAGGTTAAGGTGCTTAAAAGAAAGTTGAATCATGAAACTGGAGTCATAGGAGGGTTTGTTTCAGATAGTTATCAGAGTTTCTCTAAGGCCATGGATGAAGATACAAGCAATAGGTCAAGTTCTGGATCGGCTATATCCAACTCTGAAAGTTGTGCACAATTTGGAAATGATGCAAGTGATTTGACAGGTCCAGCTCAGTCTACTGTATGGGACACCATGGTGCCTTCAAAGAAGAGGACATGTGTGAATCGTCCCAAGCAATCTTCTGTCGAAAAACTCACTAAAGAACTATATACCATTTGGTATGAACAACAACAACAATCTTCTAATTTCTCAGGATCTTCTGAAGAGGATCTACTTTTTGAGAGTGAAAGGCCTATGGTCTCAGTTGAGATAGGACATGGAAGTGTTCTCATCAGGCATCCGAGCTCCATAGCTCGAGAAGAAGAATCCGAAGCTAGCTCTCTATCAGTTGATAATAAAATGTTATCTACAAACGAGGCTTACTCTCATTCTGCTATAAATAAACTACATATTCTAGCAAACCATAACTCACCAATACGTGATGCTGATCTAAAAAATGTTCTGAACTTTGATGAGTTTATGAGTCAATTGACCCCTGAAGAGCAAAAAGAATTAATGAAGTATCTCCCCTGGATTGATTCTATTAAACCTCCCGACAGCCTCAAGGTCATGTTTGAGAGCCCTCAGTTGAATGAGAGTTTGACTTCCTTTCAGCAACTTCTTGCCGAGGGCGTCTTTGATAGCTCCCTCCCTGGGGTGAAAAAGGAAGACTGCAATTCCCTTAGAAGGCTTGCGTTATTCAACTTGTCGAAATCACAATGGGTTGAATGCTATAATCAACTTAAGGAACCTACGAGCAGTAGTAGAGGTTCTGACGTTTCAGGTGCTAATGGATTAACTCTGAACAGTCTCATGAATGGGAAGAGATCATATGATAGTGAAATTCAAAACTTTCCAGAGGCGAAGAAGACTACAATGAAGAGCCCGAAAAGGATGATGACGAAAGCTAGCTTTGATAACAAAGATTTAAGTGAAAGTGATGGTTCTTACTATAGTCCAAGAAGCTTATTTGCTTTGCCTACTGATGGAAGCTCCTCTCTCATGTTAGAATCCTTCCATTTTGTGGGTGAAACTTCTGATCAGGGACTTCTCTTGGATGTCAAGTCTAATAGTTCTTCATTCCTTCAAGCAGAGCTTCTTTGA 1449 41.61 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTDHDDYEEHKVSKGKSITISRIKEVKVLKRKLNHETGVIGGFVSDSYQSFSKAMDEDTSNRSSSGSAISNSESCAQFGNDASDLTGPAQSTVWDTMVPSKKRTCVNRPKQSSVEKLTKELYTIWYEQQQQSSNFSGSSEEDLLFESERPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKMLSTNEAYSHSAINKLHILANHNSPIRDADLKNVLNFDEFMSQLTPEEQKELMKYLPWIDSIKPPDSLKVMFESPQLNESLTSFQQLLAEGVFDSSLPGVKKEDCNSLRRLALFNLSKSQWVECYNQLKEPTSSSRGSDVSGANGLTLNSLMNGKRSYDSEIQNFPEAKKTTMKSPKRMMTKASFDNKDLSESDGSYYSPRSLFALPTDGSSSLMLESFHFVGETSDQGLLLDVKSNSSSFLQAELL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2429606 2433908 + Conep12aG0042700.1 Cone12ag0412 449256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0412 482 PANTHER OSJNBB0038F03.10 PROTEIN 1 332 IPR044589 -
Cone12ag0412 482 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Cone12ag0412 482 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 Gene3D - 248 347 IPR038108 -
Cone12ag0412 482 SMART GATA_3 1 53 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 Gene3D - 3 68 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone12ag0412 482 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 257 366 IPR044867 -
Cone12ag0412 482 Pfam Asx homology domain 249 330 IPR028020 -
Cone12ag0412 482 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 CDD ZnF_GATA 6 52 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0412 482 MobiDBLite consensus disorder prediction 405 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0412 Cone-Chr12:2429606 Cone6ag0635 Cone-Chr6:3216648 4.04E-191 wgd
Cone12ag0412 Cone-Chr12:2429606 Cone9ag0640 Cone-Chr9:3054672 1.41E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44442 PF03479 PCC 1.60E-25 CL0615 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0412 - - - 0.0