Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0421 ATGCAGAGGGAGAGAGGTGGATGTGTGGCGAAATTGGATGGGAGTTCTATCGATCGGAAGCGAATGAACGAGGCTCTTGATAAGCAGTTGGAGCGATCCTCGCCGTCCACTTCTAGGGCGATGAATAACGGCAAGGAAAAGACTACTGTGCATTCGGTTTTGATGGGGAAGCATCCCTCTGATCAGAAGGATTCTCGCTCTAAGACTATTGGCTCCAATGAAGAATCTGAAACTGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGAGATGATACCTCCTGGATCTCATGGTTTTGTAATCTCCGAGGAAATGAATTTTATTGTGAAGTCGACGATGACTACATCCAAGATGACTTTAACCTCTGCGGGTTAAGTGGTCAAGTTCCGTATTATGATTATGCACTCGATCTGATTCTGGATGTTGAGTCCTCTAATGAAGAGCAGAATGAGCTTATTGAATCGGCAGCAGAGATGCTTTATGGATTGATTCATGCCCGATACATATTGACCAGCAAAGGAATGGCTGCTATGCTGGACAAGTATAAGAACTATGACTTTGGGAGATGCCCAAGAGTCTACTGCTGTGGCCAACCCTGCCTTCCTGTTGGTCAATTGGATATTCCTCGTTCAAGCACTGTAAAGATATACTGTCCCAGGTGTGAAGATATTTACTACCCACGATCCAAATATCAAGGTAACATTGATGGAGCATATTTCGGAACCACATTTCCACACCTGTTCTTGATGACATACGGCCACCTAAAGCCACAGAAGGCCTCTCAGAGTTACATTTCAAGAATGTTTGGGTTCAAGATCCATAAACAATGA 831 44.28 MQRERGGCVAKLDGSSIDRKRMNEALDKQLERSSPSTSRAMNNGKEKTTVHSVLMGKHPSDQKDSRSKTIGSNEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFYCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQLDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYISRMFGFKIHKQ 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2506852 2509669 + Conep12aG0043600.1 Cone12ag0421 449265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0421 276 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 87 186 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 MobiDBLite consensus disorder prediction 29 49 - -
Cone12ag0421 276 FunFam Casein kinase II subunit beta 87 186 - -
Cone12ag0421 276 SUPERFAMILY Casein kinase II beta subunit 92 275 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 MobiDBLite consensus disorder prediction 57 75 - -
Cone12ag0421 276 PANTHER CASEIN KINASE II SUBUNIT BETA 74 275 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Cone12ag0421 276 ProSitePatterns Casein kinase II regulatory subunit signature. 190 221 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 Gene3D - 187 261 - -
Cone12ag0421 276 SMART CK_II_beta_2 94 272 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 Pfam Casein kinase II regulatory subunit 94 272 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 FunFam Casein kinase II subunit beta 187 261 - -
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 236 253 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 111 125 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 161 182 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 186 207 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 208 229 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 PRINTS Casein kinase II regulatory subunit family signature 94 110 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone12ag0421 276 MobiDBLite consensus disorder prediction 26 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0421 K03115 - - cit:102621387 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0421 Cone-Chr12:2506852 Cone15ag0274 Cone-Chr15:1277744 4.58E-158 dispersed
Cone12ag0421 Cone-Chr12:2506852 Cone14ag0257 Cone-Chr14:1184204 6.20E-156 wgd
Cone12ag0421 Cone-Chr12:2506852 Cone6ag0629 Cone-Chr6:3178446 1.92E-143 wgd
Cone12ag0421 Cone-Chr12:2506852 Cone8ag0436 Cone-Chr8:2735860 5.25E-187 wgd
Cone12ag0421 Cone-Chr12:2506852 Cone9ag0632 Cone-Chr9:3000540 1.24E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84