Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0425 ATGAAGTGTTTCTTCATTTTCAAGGACAAATTGAAGGCCAAATCGGTTCCCGAACTGGACCAGAGGAGAAAACCAGGGAGTGCAGCAGCGGCGATGAACACATCGTCGCATTCGTTACCTTCTCCGAGAACAATACTGGAATTGTACAAAGAGAAAGAGCGTGATTTAAGAGTTTTCTCTTTCCAGGAGCTTAGAGATGCGACGTGTGGGTTTAATCGGATATTGAAGATCGGAGAAGGTGGGTTTGGGAGTGTTTATAAAGGAACCATTAAACCTGCTAGTGGGAATGGCGATCCGCTTATTGTCGCCATTAAAAAGCTTAATCAAAAGGGTTTACAGGGTCATAAAGAATGGCTAGCAGAAGTTCAATTCCTTGGTGTGGTAAGCCACCCGAACCTAGTAAAACTATTAGGATATTGCTCAGTAGATGGACAAAGAGTGATCCAACGGCTATTAGTGTACGAATTCATGCCCAACAAAAGCTTAGAAGATCATCTCTTTAATAAAGCTTTGCCTTCTCTCCCATGGAAAACAAGATTAGAGATTATCCTTGGTGCAGCTCAAGGATTAACTTATCTACACGGAGGATTAGAAGTGCAGGTGATATATCGGGATTTTAAATCATCAAATGTGCTATTGGATGCGGAATTTAAACCAAGGCTTTCGGATTTTGGGCTTGCTAGGGAAGGTCCGACTGGGGATCATACTCATGTATCGACTAAGGTGGTTGGGACATATGGATATGCTGCCCCGGAATATATAGAGACAGGCCATCTCCGGGCCCACAGCGATACATGGAGTTTTGGTGTGGTGCTTTACGAGATCCTTACGGGTAGGCGGGCACTGGAAAGAAACCGCCCGCCACAACAGCAGAAGTTGATAGAATGGGTCAAACAACACCCAGCAGATAGTAAAAGTTTTTTCATGATAATGGACCCAAGGCTCCGGAACCAGTATTCCATGTCAGCAGCTAGGGCTGTTGCCAGGATGGCGGACAGGTGTCTGAACAAGAATAGGGAAGATCGGCCCTCCATGAATGAGGTGGTTGAAACCTTGAGGCAAGCATTAGTAGATTCAGAAGAGAAGAGTCCTATTGAAGGGAAGAATAATGATAGGAGTTCTGATCGGTTACCATCTCAGTCTCCTAGAATTGATAGGAAATCTGTTACGTAA 1173 44.5 MKCFFIFKDKLKAKSVPELDQRRKPGSAAAAMNTSSHSLPSPRTILELYKEKERDLRVFSFQELRDATCGFNRILKIGEGGFGSVYKGTIKPASGNGDPLIVAIKKLNQKGLQGHKEWLAEVQFLGVVSHPNLVKLLGYCSVDGQRVIQRLLVYEFMPNKSLEDHLFNKALPSLPWKTRLEIILGAAQGLTYLHGGLEVQVIYRDFKSSNVLLDAEFKPRLSDFGLAREGPTGDHTHVSTKVVGTYGYAAPEYIETGHLRAHSDTWSFGVVLYEILTGRRALERNRPPQQQKLIEWVKQHPADSKSFFMIMDPRLRNQYSMSAARAVARMADRCLNKNREDRPSMNEVVETLRQALVDSEEKSPIEGKNNDRSSDRLPSQSPRIDRKSVT 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2521804 2524450 + Conep12aG0044000.1 Cone12ag0425 449269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0425 390 CDD STKc_IRAK 77 352 - -
Cone12ag0425 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 365 - -
Cone12ag0425 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0425 390 Gene3D Transferase(Phosphotransferase) domain 1 157 377 - -
Cone12ag0425 390 SUPERFAMILY Protein kinase-like (PK-like) 54 352 IPR011009 -
Cone12ag0425 390 Gene3D Phosphorylase Kinase; domain 1 51 156 - -
Cone12ag0425 390 MobiDBLite consensus disorder prediction 354 390 - -
Cone12ag0425 390 Pfam Protein tyrosine and serine/threonine kinase 76 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0425 390 MobiDBLite consensus disorder prediction 352 390 - -
Cone12ag0425 390 ProSiteProfiles Protein kinase domain profile. 71 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0425 390 PANTHER OS01G0588500 PROTEIN-RELATED 48 355 IPR050823 -
Cone12ag0425 390 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0425 Cone-Chr12:2521804 Cone4ag0440 Cone-Chr4:1972221 1.81E-171 dispersed
Cone12ag0425 Cone-Chr12:2521804 Cone6ag0626 Cone-Chr6:3169346 5.00E-173 wgd
Cone12ag0425 Cone-Chr12:2521804 Cone8ag0440 Cone-Chr8:2761272 2.19E-253 wgd
Cone12ag0425 Cone-Chr12:2521804 Cone9ag0627 Cone-Chr9:2988239 1.32E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81949 None None None None Cone PK