Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0435 ATGGATTCTCAGCAGAACAATCTCTTCGAGACGGCTTCTCAGCCGGACACGGGCAACGATGCCTACACTTTTCTTGAATTCAACACGCAGGGAGAAGGTTTCGACTATCCTGAGTTTCGAGACCCGATCAGGTCTCCTGTGGCATGGCCAACGCCGTCCGATTCGTTGGCTGATTCCATCGAACGAGGTGGTGGTGGCGGTGGCGTAGCGTCTGATCATCATTCTGACACCTCGCCGGCTGCCCCGGGCAGTGGTGCCAAGGGTCGGGTAGGTGGTTTAGGCATTAGTAGTGGGAATAATCAGGTTGTTGATGCCCTAGCGGCTGGGATGAGCGGCTTGAACTTTGAAGATACTGGTGATGATGACAATTATGAGTTTGGTAAGGGGGATTTTACCGAACATGCGTGTAGGTATTGTGGGGTTTCGAATCCGGCATGTGTGGTGAGGTGTAATGTGCCGTCTTGCCGTAAGTGGTTCTGTAATTCGAGGGGGAACACGTCTGGGTCCCACATTGTGAATCATCTGGTTCGAGCAAAACACAGAGAAGTATGTCTTCACAAGGACAGTCCTCTGGGAGAAACTATTCTTGAATGTTACAATTGTGGATGCCGGAATGTATTCCTTCTTGGATTTATTTCCGCCAAAACAGAAAGTGTGGTAGTTCTTCTTTGTAGGGAACCTTGTTTAAGTGTTAATGCATTAAAGGACATGAATTGGGATCTCAGCCAGTGGTGCCCCCTGATTGATGATAGGTGTTTTCTTCAGTGGCTTGTTAAGGTTCCATCAGAGCAGGAGCAGTTGAGGGCACGGCAGATAAGTGCCCAACAAATCAATAAGGTGGAAGAACTCTGGAAGACAAATCCTGATGCTTCCCTCGAGGACCTTGAAAAGCCTGGTGTGGATGATGAACCTCAACCTGTAGCATTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCTCCCCTTATCAAGCTTGAAGCTGACTATGACAAAATGATGAAGGAATCTCAGAGCAAGGACAATGTCACAATCCGGTGGGATATTGGTCTTAACAAGAAGCGCATTGCATATTTTGTCTTTCCAAAGGAGGACAATGAGCTACGACTTGTACCGGGAGACGAGTTGCGGCTTCGTTATTCTGGTGATGCAGCTCATCCAGCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAGGAGGAGGTGGCGCTTGAACTCCGTGCCAGTCAGGGAGTTCCAGTTGATGTCAACCACGGTTTCAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGATCGGATGCAAGGAGCAATGAAAACTTTTGCAGTAGATGAGACTAGTGTTAGTGGTTATATCTATCACCACTTACTGGGACATGAAGTAGAGGTGCAGATGGTTCGTAACACACTACCTAGGCGTTTTGGTGCACCTGGCCTTCCAGAGCTCAATGCATCCCAAGTTTTTGCAGTAAAGAGTGTCCTTCAGAGACCTATTAGTTTGATTCAAGGTCCACCTGGCACAGGGAAGACTGTAACTTCAGCAGCCATAGTGTATCACATGGCTAAACAAGGCCAGGGTCAGGTGTTGGTTTGTGCCCCTAGTAACGTTGCAGTAGACCAACTTGCTGAAAAGATAAGCTCCACTGGTCTAAAGGTTGTTCGGCTTTGTGCCAAATCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACGTCGGAAAAGAGTGAGCTTCACAAGCTGCAGCTGCTGAAAGATGAACAAGGAGAGTTGTCCAGCAGTGATGAGAAAAAATACAAAGCACTGAAACGTGCAACGGAGAGGGAGATTTCTCAGAGTGCTGATGTCATCTGTTGCACATGTGTTGGTGCTGGAGATCCTCGACTGTCAAATTTTAGATATCGCCAGGTTCTTATTGACGAGTCTACGCAAGCAACAGAGCCTGAATGTCTTATTCCCCTGGTTCTTGGGGCAAAGCAGGTTGTTCTTGTTGGTGACCATTGCCAACTTGGTCCTGTTATTATGTGCAAGAAAGCTGCTCGTGCTGGACTGGCGCAGTCTCTCTTTGAGCGTCTTGTTCTTCTCGGGGTTAAGCCAATTAGACTGCAGGTGCAATACCGCATGCACCCATCTCTGTCTGAATTTCCATCTAATAGCTTTTACGAAGGCACACTGCAAAATGGAGTCACAATTAATGAAAGGCAATCAACAGGCATTGATTTCCCTTGGCCTGTTCCCAACCGTCCTATGTTCTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCCAGTGGAACATCATATCTAAATAGGACTGAGGCTGCAAATGTGGAAAAGATTGTTACTACTTTCTTAAGGAGTGGTGTTGTTCCTAATCAGATCGGTGTGATAACACCATATGAGGGGCAACGGGCTTATATTGTGAACTACATGTCAAGGAATGGTTCTCTCCGGCAGCAACTCTACAAGGAAATCGAGGTTGCGAGTGTGGATTCATTTCAAGGAAGGGAAAAGGATTACATCATTTTGTCTTGTGTGAGGAGTAACGAACATCAGGGTATTGGATTCCTTAATGATCCTCGAAGGCTTAATGTTGCTCTGACACGTGCTCGATATGGTATTGTCATTCTGGGAAACCCCAAAGTCCTGAGCAAACAGCCATTGTGGAATGGCCTGTTGACACACTATAAGGAACATGAGTGCTTGGTTGAAGGGCCTCTAAATAACCTGAAACAGAGTATGGTACAGTTTCAGAAACCAAAAAAGATCTATAATGATCGGAGACTTTTCTTTGGTGGTGGACCTGGAGTGGTACCTAATGATGGTTATGGATCATCAGCGTCTGGTCCAAATGTTGATCACAGAAGCAATCGTGGTAGAGGTTCCTATCTACCTCCTGGCCCACCCAATGGTGCCCACAAACCTGGGTTGCATCCTTCTGGGTATCCTATGCCACGTGTCCCCCTTGCACCATTTCATGGTGGTCCTCCTTCTCAACCATATGCTATTCCCACACGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTCCCTCAACCAGGAAGTAGGGGTTTTGGGGCCGGGCGAGGAAGTGCTGGAGCCCCTATTGGAAGTCATCTTCCGCACCAACAAGGCACCCAGAAACCCATTGGAAATCTTGGTTCTACTTTCAACTTCCCTAGTTTGGAGAATCCAAATAGCCAGCCATCTGTGGGTGGTCCATTATCTCAACCTGGATTCGTGAACAATATGCCAGTTCAAGGGCCGAGCCAAACATTTCGTGATGGGTTCTCTATGGGGAGCATGTCTCAGGATTTCTTGGGTGATGATTTCAAAAGTCAGGGATCTCATGTTCCTTATAATGTTGCTGACTTCTCCACACAGGCTTCTCAAAGTGGGTATGCTGTTGATTATGTTACCCAAGGAGCACAAGGCGGATTTCCGGGGAATTTCGTGAACCAGAATTCTCAAGCGGGATATTCTCGTTTTGGAGCAGGCAATGATTTTATGTCTCAGGATTACATTGCTCATGGTTCACAAGGATTATTCACCCAAGTTAGTTTTAATGACCCCTCACAAGATGATGCCTCGCAAAGCCACTTTGGTGTGGCTAATGCCAACCCGCTTCAATCTCAGGGATTGATGAACTCTCTCTATTCTCAGCCCTTTGCCCATTACAACTCTCAGCCACTAAACTTGCAGTCCCCGCAACAGCAGGCTCAGCCAGGTCCCAGTGCCCCAAATCAGAAGATACACTACACTGGTTGA 3810 46.96 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEGFDYPEFRDPIRSPVAWPTPSDSLADSIERGGGGGGVASDHHSDTSPAAPGSGAKGRVGGLGISSGNNQVVDALAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHREVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRYRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGVVPNDGYGSSASGPNVDHRSNRGRGSYLPPGPPNGAHKPGLHPSGYPMPRVPLAPFHGGPPSQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGSAGAPIGSHLPHQQGTQKPIGNLGSTFNFPSLENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMGSMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYAVDYVTQGAQGGFPGNFVNQNSQAGYSRFGAGNDFMSQDYIAHGSQGLFTQVSFNDPSQDDASQSHFGVANANPLQSQGLMNSLYSQPFAHYNSQPLNLQSPQQQAQPGPSAPNQKIHYTG 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2583821 2595847 - Conep12aG0045000.1 Cone12ag0435 449279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 1241 1269 - -
Cone12ag0435 1269 CDD DEXXQc_UPF1 484 719 - -
Cone12ag0435 1269 Gene3D - 448 718 IPR027417 -
Cone12ag0435 1269 Gene3D - 719 930 IPR027417 -
Cone12ag0435 1269 Pfam Type III restriction enzyme, res subunit 484 554 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cone12ag0435 1269 CDD 1B_UPF1-like 340 427 IPR040812 -
Cone12ag0435 1269 Pfam AAA domain 696 892 IPR041679 -
Cone12ag0435 1269 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone12ag0435 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Cone12ag0435 1269 Pfam AAA domain 593 687 IPR041677 GO:0004386(InterPro)
Cone12ag0435 1269 Gene3D - 570 622 - -
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 1 21 - -
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 953 1009 - -
Cone12ag0435 1269 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Cone12ag0435 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 913 IPR027417 -
Cone12ag0435 1269 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 993 1009 - -
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 1042 1062 - -
Cone12ag0435 1269 Gene3D - 340 428 - -
Cone12ag0435 1269 CDD SF1_C_Upf1 720 909 IPR047187 -
Cone12ag0435 1269 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Cone12ag0435 1269 MobiDBLite consensus disorder prediction 33 93 - -
Cone12ag0435 1269 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone12ag0435 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 136 1004 IPR045055 GO:0000184(PANTHER)|GO:0003724(PANTHER)|GO:0005737(PANTHER)
Cone12ag0435 1269 FunFam Regulator of nonsense transcripts 1 719 930 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0435 K14326 - - mdm:103409468 2384.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0435 Cone-Chr12:2583821 Cone15ag0915 Cone-Chr15:7185652 1.74E-53 dispersed
Cone12ag0435 Cone-Chr12:2583821 Cone8ag0446 Cone-Chr8:2827246 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40