Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0437 ATGGCGCCGGTTTCAGCTCTGGCGAAGTACAAGCTGGTCTTCTTGGGCGATCAATCCGTCGGAAAAACTAGCATCATTACTCGCTTCATGTATGACAAATTCGATAATACTTATCAGGCTACAATTGGCATTGATTTTCTATCGAAAACTATGTATCTTGAAGATCGCACAGTTCGGCTGCAGTTATGGGACACAGCTGGACAGGAAAGATTCAGAAGTCTAATTCCAAGTTACATCAGGGATTCATCTGTGGCTGTCATCGTATATGATGTTGCAAGCCGGCAAACTTTCTTGAACACTGCAAAGTGGATCGAAGAGGTGCGCACTGAGAGGGGCAGCGATGTTATCATAGTTCTTGTTGGAAACAAAACCGACCTTGTGGAGAAGAGGCAAGTCTCTATAGAAGAAGCCGAAGCCAAAGCCCGTGAGCTAAATGTCATGTTTATCGAAACCAGTGCAAAAGCTGGCTTTAACATCAAGGCCCTATTTCGGAAAATCGCTGCTGCTTTGCCAGGTATGGAAACTCTCTCTTCAACAAAACAAGAAGACATGGTAGATGTGAATCTGAAGTCGACTAGCAGTGCTTCTCAGTCCCAGCCTCAGTCTGGTGGTTGTGCTTGTTAA 624 45.03 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSTSSASQSQPQSGGCAC 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2604368 2609153 + Conep12aG0045200.1 Cone12ag0437 449281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0437 207 PRINTS Transforming protein P21 ras signature 51 73 - -
Cone12ag0437 207 PRINTS Transforming protein P21 ras signature 113 126 - -
Cone12ag0437 207 PRINTS Transforming protein P21 ras signature 148 170 - -
Cone12ag0437 207 PRINTS Transforming protein P21 ras signature 10 31 - -
Cone12ag0437 207 PRINTS Transforming protein P21 ras signature 33 49 - -
Cone12ag0437 207 FunFam Probable Ras-related protein Rab-6A 6 202 - -
Cone12ag0437 207 PANTHER RAS-RELATED PROTEIN RAB 9 191 IPR050227 GO:0016192(PANTHER)
Cone12ag0437 207 SMART rab_sub_5 10 173 - -
Cone12ag0437 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Cone12ag0437 207 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525(InterPro)
Cone12ag0437 207 CDD Rab6 10 170 - -
Cone12ag0437 207 ProSiteProfiles small GTPase Rab1 family profile. 5 207 - -
Cone12ag0437 207 SMART ran_sub_2 15 207 - -
Cone12ag0437 207 SMART ras_sub_4 7 173 - -
Cone12ag0437 207 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Cone12ag0437 207 SMART rho_sub_3 12 172 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone12ag0437 207 Pfam Ras family 11 169 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone12ag0437 207 ProSiteProfiles small GTPase Ras family profile. 5 207 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone12ag0437 207 Gene3D - 6 203 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0437 K07893 - - gmx:100794537 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0437 Cone-Chr12:2604368 Cone6ag1560 Cone-Chr6:12209027 7.34E-126 dispersed
Cone7ag0430 Cone-Chr7:1926239 Cone12ag0437 Cone-Chr12:2604368 9.72E-129 transposed
Cone12ag0437 Cone-Chr12:2604368 Cone8ag0448 Cone-Chr8:2851468 1.46E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66