Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0439 ATGACGGCTTCATCCGGTCAAAATTCTTCAGAGAGGAAAAGCTCTCTCTCTGAACTCGCACCGCTTGAAGCAGTACTCTTCGATGTAGATGGAACGCTATGCGATTCTGATCCACTTCACTACTATGCTTTCCGTGAAATGCTTCAAGAGATAGGTTTCAATGGAGGTGTTCCCATAACTGAAGAATACTTTGTTGAAAACATTGCCGGAAAGCATAACGATGACATTGCAGTCTCGCTCTTTCCAGATGATATCGAACGAGGATTGAAATTTTGTGAAGAAAAGGAGGGAATGTTCCGAAAATTGGTGAAAGAGCAAGTGAAGCCAGTGAACGGAATATATAAGGTGAAGAAGTGGATCGAAGATAGAGGATTAAAGCGAGCTGCAGTTACAAATGCTCCTCGGGAAAATGCTGAACTGATGATTTCAATTCTCGGACTAACTGATTTCTTTGAAGCTGTAATCATAGGAGGTGAATGTGAACATGCTAAGCCTCACCCTGATCCTTATTTGAAGGGCCTTGAAGTGCTCAAGGCATCAAAAGATCACACTTTCATATTTGAGGATTCTGTGTCAGGAATAACAGCCGGAGTGGCAGCTGGGATGCCTGTGGTTGGTATAACGACTAGAAATCCGGAATCTTTACTGATGGAAGCGAAGCCGACTATCCTTATAAAGGATTATGAGGACCCAAAATTGTGGGCAGCTTTGGAAGAGCTTGATAAGAAGATGGGGTATAGTGGTACAGATGCTGCTTCAAAGATTTGA 768 42.84 MTASSGQNSSERKSSLSELAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEIGFNGGVPITEEYFVENIAGKHNDDIAVSLFPDDIERGLKFCEEKEGMFRKLVKEQVKPVNGIYKVKKWIEDRGLKRAAVTNAPRENAELMISILGLTDFFEAVIIGGECEHAKPHPDPYLKGLEVLKASKDHTFIFEDSVSGITAGVAAGMPVVGITTRNPESLLMEAKPTILIKDYEDPKLWAALEELDKKMGYSGTDAASKI 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2615219 2617770 - Conep12aG0045400.1 Cone12ag0439 449283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0439 255 CDD HAD_BPGM-like 24 209 - -
Cone12ag0439 255 NCBIfam HAD-IA family hydrolase 128 207 IPR006439 -
Cone12ag0439 255 Pfam Haloacid dehalogenase-like hydrolase 25 207 IPR041492 -
Cone12ag0439 255 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Cone12ag0439 255 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Cone12ag0439 255 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Cone12ag0439 255 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Cone12ag0439 255 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 13 240 IPR051600 -
Cone12ag0439 255 SFLD Haloacid Dehalogenase 22 230 - -
Cone12ag0439 255 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
Cone12ag0439 255 Gene3D - 23 231 IPR023214 -
Cone12ag0439 255 SUPERFAMILY HAD-like 20 239 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0439 Cone-Chr12:2615219 Cone15ag0292 Cone-Chr15:1360546 1.87E-100 dispersed
Cone12ag0439 Cone-Chr12:2615219 Cone14ag0273 Cone-Chr14:1247089 1.18E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g623 . . . . . . . . . . . . . . . . . Bhi11g00109 Tan01g2132 . . Hepe06g1060 . . . . . . . . . . Cone12ag0439 . . Lsi07g01232 . . Cme06g02501 . . . . . . . Bma12g00258 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00206 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66