Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0440 ATGGCTCCCTCCCTTTGGTCAAATTATCTATTTTTCATTGTAGCTTTGCTTTTCATGCAAAAATTTGCAGAGGGCTCGACTTGTACCGACTGTTTCATCAATTCTCGAGCTGCTTACTACCCCGATTCTGATATACAAGGAACAGATCATGGGGAATGTGGGTTTGGTTCTTTCGGAGCAACCATTAATGGCGGGGATGTATCAGCTGCATCTGACCTATACAGAAATGGAGTTGGCTGTGGTGCTTGCTACCAAGTGAGGTGCACAAACAGTGCATACTGCTCGGACAAAGGCGTATCAGTTGTGATTACTGATCAAGGGTCAAGTGACCGGACCGGCTTTATATTGAGCAGTAGGGCCTTTGGCAGCATGGCTCAAACCACTGATGCAGCAACTTCTTTATTAGCTCTGGGTGTAGTTGATATTGAATACAGACGTGTATCATGCAGTTATCCGGATAAGAATATGATAATAAAGATAGATGAGAACAGCAATTACCCTCATTATTTGGCTTTTGTTATATGGTATCAGCAAGGAAAGAAAGATATTACTGCTGTTCAGCTATGTGAGACTGAGAATTTTACATGCAAGTTATTGGATCGGAGTTATGGAGCTGTGTGGACGACGACATCACCTCCGAGTGGGCCCTTGTCGTTAAGGATGTTGTTTAGCGACGAGGATGGAGATGAGAGTTGGGTAGTTCCGGTTAATAATATACCACAAGACTGGAAAGCTGGGGAAACCTATGATACTGGAGTTCAAGTCAACTTAGAATGA 777 43.37 MAPSLWSNYLFFIVALLFMQKFAEGSTCTDCFINSRAAYYPDSDIQGTDHGECGFGSFGATINGGDVSAASDLYRNGVGCGACYQVRCTNSAYCSDKGVSVVITDQGSSDRTGFILSSRAFGSMAQTTDAATSLLALGVVDIEYRRVSCSYPDKNMIIKIDENSNYPHYLAFVIWYQQGKKDITAVQLCETENFTCKLLDRSYGAVWTTTSPPSGPLSLRMLFSDEDGDESWVVPVNNIPQDWKAGETYDTGVQVNLE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2627841 2629375 + Conep12aG0045500.1 Cone12ag0440 449284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0440 258 SUPERFAMILY Barwin-like endoglucanases 21 153 IPR036908 -
Cone12ag0440 258 Gene3D - 15 150 IPR036908 -
Cone12ag0440 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Cone12ag0440 258 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Cone12ag0440 258 Pfam Lytic transglycolase 71 144 IPR009009 -
Cone12ag0440 258 PANTHER EXPANSIN-B3 13 255 - -
Cone12ag0440 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 251 IPR007117 -
Cone12ag0440 258 CDD DPBB_EXLB_N 33 149 - -
Cone12ag0440 258 SUPERFAMILY PHL pollen allergen 154 250 IPR036749 -
Cone12ag0440 258 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Cone12ag0440 258 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576(InterPro)
Cone12ag0440 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cone12ag0440 258 Gene3D - 151 255 IPR036749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0440 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0440 Cone-Chr12:2627841 Cone6ag0633 Cone-Chr6:3209250 3.38E-72 dispersed
Cone12ag0440 Cone-Chr12:2627841 Cone8ag0450 Cone-Chr8:2867253 4.52E-184 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g630 . Blo03g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0450 Cone12ag0440 . . . . Chy04g00051 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01175 Cam09g1240 Cec09g1256 Cco09g1286 . . Cre09g1204 . Csa03g04649 . Cme04g00065
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012023 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 0 1 4 1 1 30