Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0458 ATGGCTTCTTCCTTCGCTTCGAGCGTAAAAGCAACGCTAGGTCATCTCGACAAGGAATCCTTCGTCTCCCTTCTCGGAAAGCTCATCGGAGAGTCCGAGTTCGTTCAGAATAACCCGCCGGACCTTATCCCACAAGAAGACAGGATTGTCAATCACATCCTGGAATCTCTCCTCCCCCTCAGCACCACGACAGGCGGCGGCCCTCTGGTGATCAACCACGTCACCTACGTTCCTGGACGCGGCAATTTGATCGTGGAGTATCCTGGAACTCAGCCTGGGAAGATTTTGTCCTTTGTGGGTTGTCATATGGATGTTGTAACCGCTAATCCTAATGACTGGGAATTTAGTCCATTCTCATTGAGCATTGATGGAGATAAACTCAGGGCCCGTGGAACTACAGACTGTTTAGGACATGTTGCTCTAGTAACTGAACTCATGAAAAGACTAGGAGAGACAAAGCCGAAATTGAAGTCAACTGTTATTGCTGTTTTTATAGCAAATGAAGAGAACTCTGCAACAACCGGTGTTGGAATAGATGCCTTGGTCAAAGATGGGTTGCTTAATAAGCTCAAAGAAGGCCCTCTGTTTTGGATTGACACGGCAGACAAACAACCGTGTGTTGGTACTGGTGGTATGATTCCTTGGAAGCTCAGAGTAACTGGAAAGCTTTTCCATAGTGGTTTAGCTCACAAGGCTATAAATCCGTTGGAGCTTGCCATGGAAGCACTCAAAAATATTCAAACACGCTTTTACGAAGATTTTCCTCCCCATCCAAAAGAACAGGTCTATGGATTTGCAACACCTTCAACCATGAAACCAACTCAATGGACCTATCCAGGAAGTGGAATCAATCAAATTCCAGCTGAGTGTATGATTTCAGGAGACGTCAGGCTAACTCCCTTCTACGATGTGAGGGATGTGATGAAGAAACTACAGGAGTATGTAAACGATATAAACGAAAACATACAGAAGCTTGATACACGGGGCCCGGTTTCAAAGTTTGTCTTACCAGATGAAAATCTCAGGGGAAGCCTTACTATAACTTTTGATGAGCCAATGTCTGGAGTTGCTTGCAATTTGGATTCCAGAGGCTTTCATGTTCTATGTAAAGCTACTGAGGAAGTGGTTGGGCATGTAAAGCCTTACTCTATCACCGGTAGTTTACCTCTTATTAGAGAACTTCAGGATGAGGGATTTGATGTTCAGACTGCAGGCTATGGTTTAATGGCAACATATCATGCGAATAATGAGTACTGTCTTCTTTCCGACATGTGCCAAGGCTACAGGGTTTTTGTCAGCATCATCGCGCAGCTCGAAGATTGA 1323 44.97 MASSFASSVKATLGHLDKESFVSLLGKLIGESEFVQNNPPDLIPQEDRIVNHILESLLPLSTTTGGGPLVINHVTYVPGRGNLIVEYPGTQPGKILSFVGCHMDVVTANPNDWEFSPFSLSIDGDKLRARGTTDCLGHVALVTELMKRLGETKPKLKSTVIAVFIANEENSATTGVGIDALVKDGLLNKLKEGPLFWIDTADKQPCVGTGGMIPWKLRVTGKLFHSGLAHKAINPLELAMEALKNIQTRFYEDFPPHPKEQVYGFATPSTMKPTQWTYPGSGINQIPAECMISGDVRLTPFYDVRDVMKKLQEYVNDINENIQKLDTRGPVSKFVLPDENLRGSLTITFDEPMSGVACNLDSRGFHVLCKATEEVVGHVKPYSITGSLPLIRELQDEGFDVQTAGYGLMATYHANNEYCLLSDMCQGYRVFVSIIAQLED 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2828600 2833427 - Conep12aG0047600.1 Cone12ag0458 449302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0458 440 Coils Coil 308 328 - -
Cone12ag0458 440 SUPERFAMILY Zn-dependent exopeptidases 18 438 - -
Cone12ag0458 440 PANTHER ACETYLORNITHINE DEACETYLASE 9 438 IPR050072 -
Cone12ag0458 440 Gene3D - 211 326 - -
Cone12ag0458 440 Pfam Peptidase family M20/M25/M40 99 436 IPR002933 GO:0016787(InterPro)
Cone12ag0458 440 FunFam Acetylornithine deacetylase, putative 15 206 - -
Cone12ag0458 440 SUPERFAMILY Bacterial exopeptidase dimerisation domain 211 321 IPR036264 -
Cone12ag0458 440 CDD M20_ArgE-related 16 438 - -
Cone12ag0458 440 Pfam Peptidase dimerisation domain 208 321 IPR011650 -
Cone12ag0458 440 Gene3D Zn peptidases 13 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0458 K01438 - - mdm:103436887 784.637
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001796 0 4 1 1 1 3 2 2 2 3 2 2 1 3 3 2 2 1 3 2 2 1 2 4 4 3 3 2 5 1 67