Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0459 ATGGCGGGTTTAGATTTAAGCAATAATTACTTTCACCATCTTCATCTTCCTTCTGATCAACAGCAACAACGCATACCCGACTCAGAAGAACATCAACCAGATGATGCTAACCTTGGATCCCACCGCCGTCCACGTGGCAGACCTTCTGGCTCAAAAAATAAACCGAAACCACCCATCATCGTCACCAGAGAGAGCGCTAACACCCTCCGCGCTCACATCCTCGAAGTATCGGACGGCAGCGATGTGTTCGAGAGCGTGTCGATCTATGCACGCCACCGCCAGCGCGGCATCTGCATACTGAGCGGGAGTGGGACCGTCACAAACGTTAGCTTACGTCAGCCAGCAGCAAGCGGAACCGTAGCGACTCTTCAAGGGAGGTTCGAGATATTATCGCTTTCCGGTTCATTTCTGCCCCCGCCGGCCCCGCCCGGGGCAACGAGTTTGACAATTTATTTAGGAGGCGGGCAGGGGCAGGTGTTTGGGGGGAGCGTGGTCGGGGAGTTGATAGCCTCTGGTCCGGTTATTGTCATAGCGGCATCGTTTACGAATGTAGCGTATGAGAGATTGCCTTTAGATGAACAAGTACATGAGGACTTGGCACAAATAGAGACTGGTCAAGGTCATGTAATGGGTGATGGTAACGGATTAATGCAAGATGGGGTTAATTCAGGGCTAGGGTTTCTGAACATGCCAATTGGTACTAATAGTAATAATAATCTGCAGAATGTTCAGCTCCAGGTCGATGGGTGGGGGCATTATATGAATTCTACAGGGGTTCGGAGTACTACTACTACTCCATTTTGA 804 50.5 MAGLDLSNNYFHHLHLPSDQQQQRIPDSEEHQPDDANLGSHRRPRGRPSGSKNKPKPPIIVTRESANTLRAHILEVSDGSDVFESVSIYARHRQRGICILSGSGTVTNVSLRQPAASGTVATLQGRFEILSLSGSFLPPPAPPGATSLTIYLGGGQGQVFGGSVVGELIASGPVIVIAASFTNVAYERLPLDEQVHEDLAQIETGQGHVMGDGNGLMQDGVNSGLGFLNMPIGTNSNNNLQNVQLQVDGWGHYMNSTGVRSTTTTPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2872632 2873711 + Conep12aG0047700.1 Cone12ag0459 449303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0459 267 MobiDBLite consensus disorder prediction 24 42 - -
Cone12ag0459 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 222 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone12ag0459 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 195 - -
Cone12ag0459 267 CDD DUF296 70 181 IPR005175 -
Cone12ag0459 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 182 IPR005175 -
Cone12ag0459 267 ProSiteProfiles PPC domain profile profile. 66 203 IPR005175 -
Cone12ag0459 267 FunFam AT-hook motif nuclear-localized protein 69 197 - -
Cone12ag0459 267 PIRSF ESCAROLA 5 264 IPR014476 GO:0003680(InterPro)
Cone12ag0459 267 Gene3D - 69 206 - -
Cone12ag0459 267 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0459 Cone-Chr12:2872632 Cone7ag0452 Cone-Chr7:2047086 3.25E-96 dispersed
Cone12ag0459 Cone-Chr12:2872632 Cone12ag0461 Cone-Chr12:2893829 6.76E-20 proximal
Cone12ag0459 Cone-Chr12:2872632 Cone14ag0306 Cone-Chr14:1406920 2.22E-20 wgd
Cone12ag0459 Cone-Chr12:2872632 Cone8ag0466 Cone-Chr8:3052220 1.11E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0459 - - - 0.0