Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0461 ATGGATTCACGAGACGGTTGTCCGCCTCCGCCATTATCAGCGACGAACATGATGGTGGGGCCTAATTCGTATCCTAACAATTCTACCGCGTCTCAGATGTTGCCGCCTCCGACATCTCGATTTCCGTTCAACTCCTCTGCATCGAAGCCCCTGGATTACGACGGCTCGTCGTCTGGTGGCCTTAACTCTGATTCGGGGAGGAGAAGGAGAGGTCGACCAAGAAAGTATTCGCCTGATGGTAACATTGCTTTGGGATTGACGCCCACTCCGCCTCCGCCTATTTCTTCTTCTTCTGGGGTGGTCGGCCATGGGGATTCTGGTGGCACCCCGTCATCTGAGCCGACCCTGAAGAAGCACAGGGGAAGACCCCCTGGGTCTGGAAAGAAGCAAATGGACGCCCTAGGGGCGGGTGGAGTTGGGTTTACTCCTCATGTTATTCTTGTTAAACCAGGAGAGGACATAGCATCAAAGATTACGTCTTTCTCACAGCAAGGGCCACGTACAGTTTGTATTCTCTCTGCAAATGGAGCTGTCTCTAATGTTTCCCTTTGCCAACCAGCAATGTCAGGAGGGACCATTACATATGAGGGACGATACGAGATCATCTCTCTCACAGGCTCCTACTTGCTCTCAGAGAGTAATGGAAATCGGAGCCGAACTGGTGGCTTGAGCGTTTCCCTGGCGGGGCCAGATGGCCGAGTTCTTGGCGGTGGGGTTGCAGGAATGCTCGTTGCATCATCTCTTGTTCAGGTCATTGTGGGTAGCTTCATTGAAGATGAGAAAAAGCCAAATGAACATGTAATTAGATCCGGATCTTCTTCTATGCCATCTCAAACGATTAGCTTTGGGACCCCTGTCACAGCACCTAGCCCTTCTTCTCAAGGAGCATCGAGTGACTCATCCGATGGAGATGGCAATGGTAGTCGCTCGCTTAATATGGGCCCCACCGGACTCTACAGTAATCCCAGTCAACCGCTTCATAATATGAATATGTACCATTTATGGGCCGGTCAAACGCAATAG 1023 51.32 MDSRDGCPPPPLSATNMMVGPNSYPNNSTASQMLPPPTSRFPFNSSASKPLDYDGSSSGGLNSDSGRRRRGRPRKYSPDGNIALGLTPTPPPPISSSSGVVGHGDSGGTPSSEPTLKKHRGRPPGSGKKQMDALGAGGVGFTPHVILVKPGEDIASKITSFSQQGPRTVCILSANGAVSNVSLCQPAMSGGTITYEGRYEIISLTGSYLLSESNGNRSRTGGLSVSLAGPDGRVLGGGVAGMLVASSLVQVIVGSFIEDEKKPNEHVIRSGSSSMPSQTISFGTPVTAPSPSSQGASSDSSDGDGNGSRSLNMGPTGLYSNPSQPLHNMNMYHLWAGQTQ 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2893829 2899787 - Conep12aG0048000.1 Cone12ag0461 449305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0461 340 Gene3D - 143 270 - -
Cone12ag0461 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 257 IPR005175 -
Cone12ag0461 340 CDD DUF296 142 256 IPR005175 -
Cone12ag0461 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 312 IPR039605 GO:0003680(InterPro)
Cone12ag0461 340 MobiDBLite consensus disorder prediction 99 113 - -
Cone12ag0461 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 258 - -
Cone12ag0461 340 ProSiteProfiles PPC domain profile profile. 137 278 IPR005175 -
Cone12ag0461 340 MobiDBLite consensus disorder prediction 268 324 - -
Cone12ag0461 340 MobiDBLite consensus disorder prediction 16 64 - -
Cone12ag0461 340 MobiDBLite consensus disorder prediction 264 324 - -
Cone12ag0461 340 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0461 Cone-Chr12:2893829 Cone8ag0467 Cone-Chr8:3054867 8.31E-207 dispersed
Cone12ag0459 Cone-Chr12:2872632 Cone12ag0461 Cone-Chr12:2893829 6.76E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0461 - - - 0.0