Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0465 ATGATCGACTATAGAATATCTCCACCACCACCACAACCGCCGCAAACAACTGCCATGAATCTCTGGACAGACGAGAACGCCTCCGTCATGGAAGCTTTCATGACCTCAGATCTCGCTTCCTTCTGGGCCTCTTCTTCTTCTTCAGCTCAACCTCTTCAATCTCAATCTCAGCCGCAACCAGGTCCTCCATCCGCTGCTTCTATCTCTAACCCTGCAGTCGACCACACCAAATCTCTCCTCCCTCAATCCCAGCCGCCTCAGCCGCCGTCTTCCGTCGCTCTCCTCAACCAAGACACTCTCCAGCAACGCCTCCAGGCCCTAATCGACGATTCACGAGAGATCTGGACCTACGCCATCTTCTGGCAGTCTAATTACGACTACTCAACCGACTCCGTCTTAGGCTGGGGCGACGGTTACTACAAAGGCGAAGATCCGAATAAAGCCAAGGGAAAATCCGTTAAAACAGCCTCGGCCGCCACCTCAGCAGCCGAGCAAGAGCACCGGAAAAAAGTGCTCCGTGAACTCAACTCTCTGATTTCCGGCACCGCCGTCGATGACGCTGTCGACGAGGTGGTTACAGACACCGAGTGGTTCTTCCTCGTCTCGATGACTCAATCGTTCGTTAACGGAGCTGGTTTACCGGGTCAGTCTTTTGTGAGTTCCGTCCCGGCTTGGATTTCCGGTCCGAACCGGCTCACTAACTCCCACTGCGAACGTGTTCGTCAGGCTCAGGTTTTCGGTCTACAGACAATGGTCTGTATTCCGGTAACTAACGGCGTTGTCGAGTTAGGATCGACGGAGATGATTGCGCAAAGCTCCGATCTGATGAACAAGGTTAGGCTTTTGTTCAATTTCAATAATCACGAGGTGGCTCACTCCTGGCCGTTGAACGGCACTGATCAGGAAGAGACTGATCCGACGTCGTTTTGGATCAGCGGCCCATCAACCACCATAGAAATCAAAGATTCTGCAAATAACAATAATAATGAAAATTCCATCCCATCTGCTTCAATTCCTAGTCAAACTACTCCACAAATTTCAAAGCAAACCCATTTCGAGGACCCTAGATCCAATAGCAATCCTTTAACCCAAAGCCATAACCAGACCTACTTCTCGAGAGAATTAAACTTCTCAGAATATGGGTTTGAAGGAAATAGTACAGGAAAGAACTTGAATTCAAATCCGAATTCATTGAAGCGAGAGTCGGGCGAAATTCTCAATTTTGGGGAGTGTAACAAGAGGAGTAGTGTTTATCCAACTGGGAATTTGTTTTCTAATCATTCTCAAATCATCATAGAAGACAATAACAATGGCAACAACAACAATAACAGCAACAACAACAACAACAATGGCAACAAGAAGAAAAAATCCCCTACTTCTCTGGGCAGCAATGAAGATGGGATGCTTTCATTTACATCCCATATGATCAAATCGAACGGTGTGGTCGGTGGCGATTCCGACCATTCAGATTTCGAAGCTTCAGTGGTCAGAGAAGCAGAGGATAGTAGTAGAGTAGTAGAGCTAGAAAAAAGGCCAAGGAAGAGAGGTAGAAAGCCTGCAAATGGTAGAGAAGAGCCGTTAAATCATGTCGAGGCGGAAAGACAGAGGAGAGAGAAGCTCAACCAAAGATTCTACTCTCTAAGAGCAGTAGTCCCTAACGTGTCAAAAATGGACAAAGCTTCTCTCTTAGGAGATGCCATTTCTTACATAAACGAGCTTAAGGAGAAGCTTCAAAGCACCGAATTCGAAAAGGAAGAGTTAGAGAAACAGGTGCAGGCTGTGAAGAAGGATTTAGGTGGAAGTAATACTAATCGGCTGCGTTGCTCTGATCAAGACATGAAAATTTCTAACCACGGAGGGGTGAAATCGATTGAGATGGATATTGACGTGAAGATAATTGGATGGGATGCTATGATTAGGATTCAGTGTAATAAGAAGAACCATCCAGCTGCTAGATTAATGGGTGCTTTGAAAGAGCTTGATTTGGAAGTTCATCATGCTAGTGTTTCTGTAGTTAATGATTTGATGATCCAACAAGCGACGGTGAAGATGGGTACTCGTTTTTATAGCCCGGACCAGCTTAGAATGGCTCTTTCTGCCGAAATTAATGGTGGTGTATAA 2121 46.25 MIDYRISPPPPQPPQTTAMNLWTDENASVMEAFMTSDLASFWASSSSSAQPLQSQSQPQPGPPSAASISNPAVDHTKSLLPQSQPPQPPSSVALLNQDTLQQRLQALIDDSREIWTYAIFWQSNYDYSTDSVLGWGDGYYKGEDPNKAKGKSVKTASAATSAAEQEHRKKVLRELNSLISGTAVDDAVDEVVTDTEWFFLVSMTQSFVNGAGLPGQSFVSSVPAWISGPNRLTNSHCERVRQAQVFGLQTMVCIPVTNGVVELGSTEMIAQSSDLMNKVRLLFNFNNHEVAHSWPLNGTDQEETDPTSFWISGPSTTIEIKDSANNNNNENSIPSASIPSQTTPQISKQTHFEDPRSNSNPLTQSHNQTYFSRELNFSEYGFEGNSTGKNLNSNPNSLKRESGEILNFGECNKRSSVYPTGNLFSNHSQIIIEDNNNGNNNNNSNNNNNNGNKKKKSPTSLGSNEDGMLSFTSHMIKSNGVVGGDSDHSDFEASVVREAEDSSRVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKEKLQSTEFEKEELEKQVQAVKKDLGGSNTNRLRCSDQDMKISNHGGVKSIEMDIDVKIIGWDAMIRIQCNKKNHPAARLMGALKELDLEVHHASVSVVNDLMIQQATVKMGTRFYSPDQLRMALSAEINGGV 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2953872 2956356 - Conep12aG0048400.1 Cone12ag0465 449309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0465 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 524 573 IPR011598 GO:0046983(InterPro)
Cone12ag0465 706 SMART finulus 530 579 IPR011598 GO:0046983(InterPro)
Cone12ag0465 706 PANTHER MYC 84 700 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cone12ag0465 706 MobiDBLite consensus disorder prediction 495 529 - -
Cone12ag0465 706 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 527 593 IPR036638 GO:0046983(InterPro)
Cone12ag0465 706 MobiDBLite consensus disorder prediction 295 365 - -
Cone12ag0465 706 Coils Coil 570 604 - -
Cone12ag0465 706 MobiDBLite consensus disorder prediction 432 468 - -
Cone12ag0465 706 Pfam Helix-loop-helix DNA-binding domain 528 574 IPR011598 GO:0046983(InterPro)
Cone12ag0465 706 MobiDBLite consensus disorder prediction 46 63 - -
Cone12ag0465 706 CDD bHLH_AtAIB_like 521 596 - -
Cone12ag0465 706 FunFam Transcription factor bHLH13 517 591 - -
Cone12ag0465 706 Pfam Plant bHLH transcription factor, ACT-like domain 628 698 IPR054502 -
Cone12ag0465 706 Gene3D - 523 600 IPR036638 GO:0046983(InterPro)
Cone12ag0465 706 MobiDBLite consensus disorder prediction 46 71 - -
Cone12ag0465 706 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 100 283 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0496 Cone-Chr11:2544288 Cone12ag0465 Cone-Chr12:2953872 2.62E-61 dispersed
Cone12ag0465 Cone-Chr12:2953872 Cone15ag0484 Cone-Chr15:2302489 7.55E-70 dispersed
Cone12ag0465 Cone-Chr12:2953872 Cone8ag0471 Cone-Chr8:3119283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44448 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0465 K13422 - vvi:100250607 771.926