Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0465 | ATGATCGACTATAGAATATCTCCACCACCACCACAACCGCCGCAAACAACTGCCATGAATCTCTGGACAGACGAGAACGCCTCCGTCATGGAAGCTTTCATGACCTCAGATCTCGCTTCCTTCTGGGCCTCTTCTTCTTCTTCAGCTCAACCTCTTCAATCTCAATCTCAGCCGCAACCAGGTCCTCCATCCGCTGCTTCTATCTCTAACCCTGCAGTCGACCACACCAAATCTCTCCTCCCTCAATCCCAGCCGCCTCAGCCGCCGTCTTCCGTCGCTCTCCTCAACCAAGACACTCTCCAGCAACGCCTCCAGGCCCTAATCGACGATTCACGAGAGATCTGGACCTACGCCATCTTCTGGCAGTCTAATTACGACTACTCAACCGACTCCGTCTTAGGCTGGGGCGACGGTTACTACAAAGGCGAAGATCCGAATAAAGCCAAGGGAAAATCCGTTAAAACAGCCTCGGCCGCCACCTCAGCAGCCGAGCAAGAGCACCGGAAAAAAGTGCTCCGTGAACTCAACTCTCTGATTTCCGGCACCGCCGTCGATGACGCTGTCGACGAGGTGGTTACAGACACCGAGTGGTTCTTCCTCGTCTCGATGACTCAATCGTTCGTTAACGGAGCTGGTTTACCGGGTCAGTCTTTTGTGAGTTCCGTCCCGGCTTGGATTTCCGGTCCGAACCGGCTCACTAACTCCCACTGCGAACGTGTTCGTCAGGCTCAGGTTTTCGGTCTACAGACAATGGTCTGTATTCCGGTAACTAACGGCGTTGTCGAGTTAGGATCGACGGAGATGATTGCGCAAAGCTCCGATCTGATGAACAAGGTTAGGCTTTTGTTCAATTTCAATAATCACGAGGTGGCTCACTCCTGGCCGTTGAACGGCACTGATCAGGAAGAGACTGATCCGACGTCGTTTTGGATCAGCGGCCCATCAACCACCATAGAAATCAAAGATTCTGCAAATAACAATAATAATGAAAATTCCATCCCATCTGCTTCAATTCCTAGTCAAACTACTCCACAAATTTCAAAGCAAACCCATTTCGAGGACCCTAGATCCAATAGCAATCCTTTAACCCAAAGCCATAACCAGACCTACTTCTCGAGAGAATTAAACTTCTCAGAATATGGGTTTGAAGGAAATAGTACAGGAAAGAACTTGAATTCAAATCCGAATTCATTGAAGCGAGAGTCGGGCGAAATTCTCAATTTTGGGGAGTGTAACAAGAGGAGTAGTGTTTATCCAACTGGGAATTTGTTTTCTAATCATTCTCAAATCATCATAGAAGACAATAACAATGGCAACAACAACAATAACAGCAACAACAACAACAACAATGGCAACAAGAAGAAAAAATCCCCTACTTCTCTGGGCAGCAATGAAGATGGGATGCTTTCATTTACATCCCATATGATCAAATCGAACGGTGTGGTCGGTGGCGATTCCGACCATTCAGATTTCGAAGCTTCAGTGGTCAGAGAAGCAGAGGATAGTAGTAGAGTAGTAGAGCTAGAAAAAAGGCCAAGGAAGAGAGGTAGAAAGCCTGCAAATGGTAGAGAAGAGCCGTTAAATCATGTCGAGGCGGAAAGACAGAGGAGAGAGAAGCTCAACCAAAGATTCTACTCTCTAAGAGCAGTAGTCCCTAACGTGTCAAAAATGGACAAAGCTTCTCTCTTAGGAGATGCCATTTCTTACATAAACGAGCTTAAGGAGAAGCTTCAAAGCACCGAATTCGAAAAGGAAGAGTTAGAGAAACAGGTGCAGGCTGTGAAGAAGGATTTAGGTGGAAGTAATACTAATCGGCTGCGTTGCTCTGATCAAGACATGAAAATTTCTAACCACGGAGGGGTGAAATCGATTGAGATGGATATTGACGTGAAGATAATTGGATGGGATGCTATGATTAGGATTCAGTGTAATAAGAAGAACCATCCAGCTGCTAGATTAATGGGTGCTTTGAAAGAGCTTGATTTGGAAGTTCATCATGCTAGTGTTTCTGTAGTTAATGATTTGATGATCCAACAAGCGACGGTGAAGATGGGTACTCGTTTTTATAGCCCGGACCAGCTTAGAATGGCTCTTTCTGCCGAAATTAATGGTGGTGTATAA | 2121 | 46.25 | MIDYRISPPPPQPPQTTAMNLWTDENASVMEAFMTSDLASFWASSSSSAQPLQSQSQPQPGPPSAASISNPAVDHTKSLLPQSQPPQPPSSVALLNQDTLQQRLQALIDDSREIWTYAIFWQSNYDYSTDSVLGWGDGYYKGEDPNKAKGKSVKTASAATSAAEQEHRKKVLRELNSLISGTAVDDAVDEVVTDTEWFFLVSMTQSFVNGAGLPGQSFVSSVPAWISGPNRLTNSHCERVRQAQVFGLQTMVCIPVTNGVVELGSTEMIAQSSDLMNKVRLLFNFNNHEVAHSWPLNGTDQEETDPTSFWISGPSTTIEIKDSANNNNNENSIPSASIPSQTTPQISKQTHFEDPRSNSNPLTQSHNQTYFSRELNFSEYGFEGNSTGKNLNSNPNSLKRESGEILNFGECNKRSSVYPTGNLFSNHSQIIIEDNNNGNNNNNSNNNNNNGNKKKKSPTSLGSNEDGMLSFTSHMIKSNGVVGGDSDHSDFEASVVREAEDSSRVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKEKLQSTEFEKEELEKQVQAVKKDLGGSNTNRLRCSDQDMKISNHGGVKSIEMDIDVKIIGWDAMIRIQCNKKNHPAARLMGALKELDLEVHHASVSVVNDLMIQQATVKMGTRFYSPDQLRMALSAEINGGV | 706 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2953872 | 2956356 | - | Conep12aG0048400.1 | Cone12ag0465 | 449309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0465 | 706 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 524 | 573 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0465 | 706 | SMART | finulus | 530 | 579 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0465 | 706 | PANTHER | MYC | 84 | 700 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
Cone12ag0465 | 706 | MobiDBLite | consensus disorder prediction | 495 | 529 | - | - | |
Cone12ag0465 | 706 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 527 | 593 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0465 | 706 | MobiDBLite | consensus disorder prediction | 295 | 365 | - | - | |
Cone12ag0465 | 706 | Coils | Coil | 570 | 604 | - | - | |
Cone12ag0465 | 706 | MobiDBLite | consensus disorder prediction | 432 | 468 | - | - | |
Cone12ag0465 | 706 | Pfam | Helix-loop-helix DNA-binding domain | 528 | 574 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0465 | 706 | MobiDBLite | consensus disorder prediction | 46 | 63 | - | - | |
Cone12ag0465 | 706 | CDD | bHLH_AtAIB_like | 521 | 596 | - | - | |
Cone12ag0465 | 706 | FunFam | Transcription factor bHLH13 | 517 | 591 | - | - | |
Cone12ag0465 | 706 | Pfam | Plant bHLH transcription factor, ACT-like domain | 628 | 698 | IPR054502 | - | |
Cone12ag0465 | 706 | Gene3D | - | 523 | 600 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0465 | 706 | MobiDBLite | consensus disorder prediction | 46 | 71 | - | - | |
Cone12ag0465 | 706 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 100 | 283 | IPR025610 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0496 | Cone-Chr11:2544288 | Cone12ag0465 | Cone-Chr12:2953872 | 2.62E-61 | dispersed | |
Cone12ag0465 | Cone-Chr12:2953872 | Cone15ag0484 | Cone-Chr15:2302489 | 7.55E-70 | dispersed | |
Cone12ag0465 | Cone-Chr12:2953872 | Cone8ag0471 | Cone-Chr8:3119283 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44448 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0465 | K13422 | - | vvi:100250607 | 771.926 |