Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0472 ATGGCAGCTGAGGCTGATCCCTTTAATGTCAATAACTCGAAGACAGTATGTGTAATGGATGCTTCTGGAAAACTGGGTTTAAGCCTTGTCGAGAAGCTTCTTCAAAAAGGGTTTACCGTTCATGCTGCTGTTCAAAACCATGGTGAATTGATGTTTAATGGGTATGACAAGAAGAAGCTGAAAGTTTTTCGTTCGGACCCATATGATTACCAGAGTATAATCGATGCAATTAGAGGATGTTCTGGTTTGTTTTATGCCTTTGAGCCTCCTCAAGATCAACCCACCTATGATGAATTCATGGCAGAAGTGGAGGTGAGAGCAGCACACAATGTGTTAGAAGCATGTGCTCAAACCGAAACAATAGACAAAGTAATATTCACATCTTCTATCACTGCTGTTATTTGGAGAGACAATCGGAACTCTATTACTTCGGACTTGGATGAAAGATATTGGAGTGATATCAACTTTTGCCGTAAATTCAAGTTATGGCATGCCCTATCAAAAACTCTAGCTGAGAAGACCGCATGGGCTTTGGCCATGGACAGAGGAGTGAACATGATGTCGGTTAATGCCGGACTACCAATCGGTCCTGATCTGAGCATTGACCATCCGTATTTAAAAGGAGCGGCTGAGATGTATGAAGACGGGCTATTTGTGACCGTTGATTTAAATTTCTTGGTGGATGCTCTCATTTGCATTTTCCAAGACATTTCATCCTACGGCCGGTATCTATGTTTCAACCATATCATCAATAGGCATGAAGATGCTGTCGAGCTTGCCTGGAAGTTGAGCCCTTCTCTAACTTCACTATGTGAAAGCAATGAGCATGATGTGAGGATCATCCCAGAGAGGATAAGCAACAAGAAGTTGAACAAATTGATGGTGGGCTTTTGA 894 42.17 MAAEADPFNVNNSKTVCVMDASGKLGLSLVEKLLQKGFTVHAAVQNHGELMFNGYDKKKLKVFRSDPYDYQSIIDAIRGCSGLFYAFEPPQDQPTYDEFMAEVEVRAAHNVLEACAQTETIDKVIFTSSITAVIWRDNRNSITSDLDERYWSDINFCRKFKLWHALSKTLAEKTAWALAMDRGVNMMSVNAGLPIGPDLSIDHPYLKGAAEMYEDGLFVTVDLNFLVDALICIFQDISSYGRYLCFNHIINRHEDAVELAWKLSPSLTSLCESNEHDVRIIPERISNKKLNKLMVGF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3037681 3041315 - Conep12aG0049100.1 Cone12ag0472 449316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0472 297 Gene3D - 6 297 - -
Cone12ag0472 297 Pfam NAD(P)H-binding 21 133 IPR016040 -
Cone12ag0472 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 265 IPR036291 -
Cone12ag0472 297 CDD FR_SDR_e 16 295 - -
Cone12ag0472 297 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 294 IPR050425 GO:0016616(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0472 Cone-Chr12:3037681 Cone1ag0909 Cone-Chr1:54612151 5.38E-135 dispersed
Cone12ag0472 Cone-Chr12:3037681 Cone5ag0620 Cone-Chr5:2655577 2.22E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61