Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0476 ATGAGCTCGTCGGAGTTTGAGCCGGAAGCGCCCGATCTTGTCTGCCAGCTCGGAAACGTCCAAGGAATGGTCGATGCTCTCACCGCCGTCCGATGGAAACGCCATCAGGATGCTTCCATGGAATTATCAGAGCACGGCATTGTGTTGACTGTAGAGGAATCCGGTTGTGTTCAGGCCAAAGTGTATCTTCAACGAGAGCTTTTTGTTCGATATGAGTACAATTCACAAGGGCGGCCCCGTTTTGGAGTTAGCTTGGGACTCTTTGTCGATTGCTTAAACACATTTTCAGTTCCTGGGCGTTCAAGCGGTATTGAAATTCGGTATCCAGGACCTGACATGCAGCTTCTTCTCAAGTCAGTTGATTGCATAGATGCTTGCATCTATGCGGAAATCAGGACAAGAATCCAAGAAACTATTTCATGGGATTACAATTTCGAACCTGCCGGAAGCACCCCCATTAATTTTACTGTTAAGTCTGCAGCATTAAAGGAAGCTATTGATGATCTTGAATGGCCTGGATCAAGCATCCAGATCACTCTACAACCAGTTCCCCCCACAGTTATCTTTAGAGGAGAAGGCCATGGAGACTTGCAGATAGATTTCACGTATTATGCAAACACCGATCTTCTGATTTCATTCAATTGCGATCGTCATGTTTCTTACAGGTATAAATACAAGTTTCTCCGGGCAATAACTTCAAACATTCCGGGAAGTGTTATTAAAGATAACAGAGCAAGTAAGTTGACTATTGGAAGAGGTGGGATGCTTAAAGTGCAGCATCTTGTTTCTGTGGGAAGAACATACACTTCACATGCACATATTGATTCTGCTGGTCATCAGCAGCCCAATAGAATCGCCTACATCGAATTCTTTCTGAAACCGGAAGAAGAAGAAGAAGATGAACACAACATAAATGATTGA 921 44.08 MSSSEFEPEAPDLVCQLGNVQGMVDALTAVRWKRHQDASMELSEHGIVLTVEESGCVQAKVYLQRELFVRYEYNSQGRPRFGVSLGLFVDCLNTFSVPGRSSGIEIRYPGPDMQLLLKSVDCIDACIYAEIRTRIQETISWDYNFEPAGSTPINFTVKSAALKEAIDDLEWPGSSIQITLQPVPPTVIFRGEGHGDLQIDFTYYANTDLLISFNCDRHVSYRYKYKFLRAITSNIPGSVIKDNRASKLTIGRGGMLKVQHLVSVGRTYTSHAHIDSAGHQQPNRIAYIEFFLKPEEEEEDEHNIND 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3094828 3097602 - Conep12aG0049500.1 Cone12ag0476 449320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0476 306 CDD PCNA 14 262 - -
Cone12ag0476 306 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 6 301 IPR003021 GO:0000077(PANTHER)|GO:0000077(InterPro)|GO:0006281(PANTHER)|GO:0030896(PANTHER)
Cone12ag0476 306 PRINTS Repair protein Rad1/Rec1 family signature 15 32 IPR003021 GO:0000077(InterPro)
Cone12ag0476 306 PRINTS Repair protein Rad1/Rec1 family signature 282 297 IPR003021 GO:0000077(InterPro)
Cone12ag0476 306 PRINTS Repair protein Rad1/Rec1 family signature 59 75 IPR003021 GO:0000077(InterPro)
Cone12ag0476 306 PRINTS Repair protein Rad1/Rec1 family signature 245 262 IPR003021 GO:0000077(InterPro)
Cone12ag0476 306 SUPERFAMILY DNA clamp 153 261 IPR046938 -
Cone12ag0476 306 FunFam Damaged DNA binding protein 10 296 - -
Cone12ag0476 306 Pfam Repair protein Rad1/Rec1/Rad17 14 233 IPR003021 GO:0000077(InterPro)
Cone12ag0476 306 Gene3D - 10 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0476 K02830 - - cit:102608653 503.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0476 Cone-Chr12:3094828 Cone8ag0481 Cone-Chr8:3306137 7.56E-209 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0481 Cone12ag0476 . . . . . . Blo03g00875 . Bda07g00084 . . Bpe11g00321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010333 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32