Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0481 | ATGAGTTTTCAAGATATCGAGGCCGGCCGACCCTTTGCTTCATCGAGGCGAGATGTCATCAATCACAAGCAAGATCCTACACAAGCTGTCGCCGCCGGAATATTCCATATCAACACCGCCGTGGCCACGTTTCAGAGACTTGTTAACACCATCGGAACCCCTAAGGACACCGTCGAGCTCCGTGACAAGCTGCACAAGACAAGGGTACACATTGGACTATTGGTGAAGGATACTTCGGCCAGGCTCAAACAAGCTAGTGAAATTGATCACAATGCTGAAGTTAAAGCAAGCAAGAAAATTACAGATGCAAAACTTGCCAAAGATTTGCAAGCAGTCTTGAAAGACTTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATGCTCCTTTTGTTCCTCAATCCGCTCTCCCTTCCAGCTACTTGGACAGTGAGGAAGTTGTAAATTCAAGTAAGAATTCACAGCAACAAGCCCTTCTGATGGAGTCTAAGAGACACGAGGTGGTGCTGTTGGACAATGAAATCGCTTTCAATGAGGCGGTAATAGAGGAAAGAGAACAAGGAATTCAAGAAATTCAACAGCAAATTGGTGAAGTGAATGAAATTTTTAAAGATCTGGCCGTTCTAGTCCACGGGCAAGGAGCTATAATAGATGATATTGGATCCAACATAGAGAGCTCCCATGCTGCGAGTGCTCAGGGAACATCCCACCTAGTAAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGGCCTGCTTACTCTTGGTGATATTTGGGATCGTACTTCTTATTGTGATTATAGTACTTGCAGCATAA | 825 | 44.48 | MSFQDIEAGRPFASSRRDVINHKQDPTQAVAAGIFHINTAVATFQRLVNTIGTPKDTVELRDKLHKTRVHIGLLVKDTSARLKQASEIDHNAEVKASKKITDAKLAKDLQAVLKDFQKAQRLAAERETAYAPFVPQSALPSSYLDSEEVVNSSKNSQQQALLMESKRHEVVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVHGQGAIIDDIGSNIESSHAASAQGTSHLVKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3111080 | 3114352 | - | Conep12aG0050000.1 | Cone12ag0481 | 449325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0481 | 274 | FunFam | Syntaxin-22 like | 21 | 134 | - | - | |
| Cone12ag0481 | 274 | SMART | SynN_4 | 16 | 128 | IPR006011 | GO:0016020(InterPro) | |
| Cone12ag0481 | 274 | SUPERFAMILY | t-snare proteins | 24 | 235 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cone12ag0481 | 274 | FunFam | Syntaxin-22 like | 174 | 274 | - | - | |
| Cone12ag0481 | 274 | ProSitePatterns | Syntaxin / epimorphin family signature. | 187 | 226 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0481 | 274 | PANTHER | SYNTAXIN | 37 | 263 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone12ag0481 | 274 | Pfam | SNARE domain | 218 | 269 | IPR000727 | - | |
| Cone12ag0481 | 274 | Gene3D | - | 18 | 134 | - | - | |
| Cone12ag0481 | 274 | SMART | tSNARE_6 | 176 | 243 | IPR000727 | - | |
| Cone12ag0481 | 274 | Pfam | Syntaxin-like protein | 31 | 130 | IPR006011 | GO:0016020(InterPro) | |
| Cone12ag0481 | 274 | Gene3D | - | 175 | 274 | - | - | |
| Cone12ag0481 | 274 | CDD | SNARE_Qa | 201 | 242 | - | - | |
| Cone12ag0481 | 274 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 181 | 243 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0481 | Cone-Chr12:3111080 | Cone15ag0918 | Cone-Chr15:7248142 | 6.37E-113 | dispersed | |
| Cone12ag0481 | Cone-Chr12:3111080 | Cone8ag0484 | Cone-Chr8:3325737 | 3.74E-161 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0481 | - | - | - | 0.0 |