Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0484 ATGTATGGGGATTGCCAAGTGATGTCAAGCATGGGAGGAAACGTAGGTTCCACAGAAAACCTATTTTCTTCGCCGATCCAAAACCCTAATAATAACTTCGAGTTCATGTCCAGTATTCCTTTCCAACAGTACCCCCTTATCTCTCTTAAAGAAGAAAGTGGGATTTTGAGATCATCTGGGAAGGAAGAAATGGAGAGTGGTGGGTCTGGAAGCGAACTACAAGCTGAAGAAAATACTGGAAATATGATTGAACAGGACAGTACTGCTGATCAACAGAAGCTTCTCTCTAAGAAGAAACAATATCATCGTCACACCGCTCGCCAGATCCAACAGATGGAAGCATTGTTTAAGGAATGTCCCCACCCAGATGATAAGCAAAAGATGAGATTAAGCCAAGATCTTGGCCTTAAACCCCGCCAAGTCAAGTTCTGGTTCCAAAACCGAAGGACCCAGATGAAGGCACAGCAGGACCGAGCAGAAAATGCAATACTAAGAGCAGAGAATGAGAGCTTGAAGAATGAGAATTACAAATTACAAACGGCCATCAGAAGTATAATGTGCCCTAATTGTGGTGATCATGGCATCCTTGGAGAACCTAACTTGGACGATGAGCAACTTCACCTTGAAAATGCTCGCCTGAGAGAAGAGTTGGAGCGAGTTTGTTGTTTGACGTCAAGATACTCTGGCCGGCCGATGCAAATTATGAGTCCTTCTCCACAATTCATGCCCTCATCATTGGATTTAGACATTAACGTATATTCAAGGAAATTTCAAGACCCAATCAATGTCTCTTCAACTCATCATCATGACTTTATGTCCTCACCAATGCCTCCTAATTTGGTCCCTAGTACTAGTACTCATGATCATCATCAAGCTTCAAGCTATGCTCATCATGATCAAAATGGTATGACCCTAATATTAATGGAAGAGGAAAAACCACTTGCAAATGAGCTTGCTGTTTCTTCCATGAATGAATTCGTCAAGATGTGTCAAGCCAGTGACCCTCTTTGGATTAGAGATAATGAGAGTGGTAAAGAAGTCCTTAATGTGGAAGAGCATGTTAGATTATTTCCATGGCCATTGAACCATCTCAAACAACATTCTAATGAGTTGAGGACCGAAGCTACCCGTGATAGTGCTGTCGTTATAATGAATAGCGTCACTCTTGTTGATGCTTTCCTCGATGCTGGTAAATGGATGGAGTTGTTTCCTTCAATTGTTGCAAGAGCAAAAACTGTTCAGGTGATCTCACCAAGTTCTTCAGCTAGTGGTTCCCTTCAGCTGATGTATGCAGAATTGCAAGTACTTTCACCATTGGTACCAACTCGAGAGGCATATTTTCTTCGCTATTGCCAGCAGAATGCCGAAGAGGGAACATGGGCAATCGTCGATTTTCCGATCGATAGTTTCCATGACAATCTTCAACCTTCATTCCCCAAATACAAGAGAAGGCCTTCTGGTTGCATTATCCAAGATATGCCTAATGGTTACTCAAGGGTTACATGGTTAGAGCATGCAGAGATAGAGGAGAAGCCTGTTCATCAGATATTTAGTGAATTAGTGTATAGTGGGATGGCGTTTGGAGCCAAACGCTGGTTAGCTGTTTTACAGCGACAATGTGAGAGGATGGCAAGCCTCATGGCTAGAAATATTTCTGATCTTGGAGTGATACCATCCCCAGAAGCAAGAAAAATCTTAATGAAACTAGCACAAAGGATGATAAGAACATTCAGTGTCAGCATGAGCACTTCGGGCGGGCAGTCATGGACGGCTATATCGAACTCTCCGGATGACACAGTTAGAATCACGACAAGAAAAGTTGTGGAACCCGGTCAACCAACCGGAGTTATTCTCAGTGCCGTTTCCACCACTTGGCTTCCTTATTCTCATTCTCATGTTTTCGATTTCCTTAGAGATGAACGCCGTAGATCTCAGTTGGAGGTGCTGTCTAATGGAAATTCTTTACATGAGGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAATTGTATTTCTCTCCTTCGCATTAATGTAGCAAGCAACTCATCCCAACAAGTAGAACTAATGCTACAAGAGAGCTGCACCGACCAATCAGGAAGCCTCGTGGTCTACACCACCATAGACGTTGACTCGATCCAGCGGGCAATGAACGGCGACGACCCCTCATTCATTCCTCTCCTTCCATTAGGGTTTGTAATAGTACCTTTTGGATCTTCTACAAATGACAACAGCATGATTACAGCGCCACCACCATCCGATCACGATGGTGTGGGAGTCTCCTCTGCCACCCCGGCTGGGAATTCTTCCAGTTGCCTTTTGACGGTGGGGCTGCAAGTTCTTGCTAGCACAATCGCGTCATCAAAACTAAACCTCTCTAGTGTGAACGCAATCAACAACCATTTGTGTAACACGGTCCATCAGATCAATGCTGTTCTTAATTCCGGAAGCTGTGCCAGCACTGAACCGGCCAGTTCATTGGCCAAGGAATTATAG 2493 44.08 MYGDCQVMSSMGGNVGSTENLFSSPIQNPNNNFEFMSSIPFQQYPLISLKEESGILRSSGKEEMESGGSGSELQAEENTGNMIEQDSTADQQKLLSKKKQYHRHTARQIQQMEALFKECPHPDDKQKMRLSQDLGLKPRQVKFWFQNRRTQMKAQQDRAENAILRAENESLKNENYKLQTAIRSIMCPNCGDHGILGEPNLDDEQLHLENARLREELERVCCLTSRYSGRPMQIMSPSPQFMPSSLDLDINVYSRKFQDPINVSSTHHHDFMSSPMPPNLVPSTSTHDHHQASSYAHHDQNGMTLILMEEEKPLANELAVSSMNEFVKMCQASDPLWIRDNESGKEVLNVEEHVRLFPWPLNHLKQHSNELRTEATRDSAVVIMNSVTLVDAFLDAGKWMELFPSIVARAKTVQVISPSSSASGSLQLMYAELQVLSPLVPTREAYFLRYCQQNAEEGTWAIVDFPIDSFHDNLQPSFPKYKRRPSGCIIQDMPNGYSRVTWLEHAEIEEKPVHQIFSELVYSGMAFGAKRWLAVLQRQCERMASLMARNISDLGVIPSPEARKILMKLAQRMIRTFSVSMSTSGGQSWTAISNSPDDTVRITTRKVVEPGQPTGVILSAVSTTWLPYSHSHVFDFLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQQVELMLQESCTDQSGSLVVYTTIDVDSIQRAMNGDDPSFIPLLPLGFVIVPFGSSTNDNSMITAPPPSDHDGVGVSSATPAGNSSSCLLTVGLQVLASTIASSKLNLSSVNAINNHLCNTVHQINAVLNSGSCASTEPASSLAKEL 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3140093 3146047 + Conep12aG0050400.1 Cone12ag0484 449328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0484 830 SUPERFAMILY Bet v1-like 568 809 - -
Cone12ag0484 830 SMART START_1 317 542 IPR002913 GO:0008289(InterPro)
Cone12ag0484 830 FunFam Homeobox-leucine zipper protein HDG1 83 171 - -
Cone12ag0484 830 Pfam Homeodomain 98 153 IPR001356 GO:0003677(InterPro)
Cone12ag0484 830 Pfam START domain 318 542 IPR002913 GO:0008289(InterPro)
Cone12ag0484 830 SUPERFAMILY Bet v1-like 309 544 - -
Cone12ag0484 830 Gene3D - 336 544 IPR023393 -
Cone12ag0484 830 MobiDBLite consensus disorder prediction 83 107 - -
Cone12ag0484 830 CDD START_ArGLABRA2_like 312 541 - -
Cone12ag0484 830 Coils Coil 149 181 - -
Cone12ag0484 830 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone12ag0484 830 Gene3D - 82 169 - -
Cone12ag0484 830 SUPERFAMILY Homeodomain-like 86 156 IPR009057 -
Cone12ag0484 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 813 IPR042160 -
Cone12ag0484 830 MobiDBLite consensus disorder prediction 57 76 - -
Cone12ag0484 830 SMART HOX_1 97 159 IPR001356 GO:0003677(InterPro)
Cone12ag0484 830 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677(InterPro)
Cone12ag0484 830 CDD homeodomain 98 156 IPR001356 GO:0003677(InterPro)
Cone12ag0484 830 ProSiteProfiles START domain profile. 308 545 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0484 Cone-Chr12:3140093 Cone12ag1384 Cone-Chr12:10229796 4.89E-194 dispersed
Cone12ag0484 Cone-Chr12:3140093 Cone14ag0331 Cone-Chr14:1544963 2.83E-126 wgd
Cone12ag0484 Cone-Chr12:3140093 Cone8ag0486 Cone-Chr8:3377935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44452 PF01237 Oxysterol_BP 3.20E-119 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0484 - - - 0.0