Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0486 ATGATGGAACTATTTCCAGCACAACCAGATTTATCATTGCAAATCAGCCCTCCAAACACCAAAATCTCAAAACCCAATTCTTGTTTTGACCTCTCACTCTCCTCCACATCTCCAAGAGTACTCACCGACGACCACCTACACCACGACAACAGCCATCACCACCACCACCACCACCACCGCCAAGAGCAGTTCCTCCTCCATCAGCAGCAGCACCGCCCACCGCTATACCACTACCACCACCACCACCTACAAGGGCTGAGTCAATTGGAGCTCAATAGCTTCCTGAATAGTAGTACCACTCAACCCATAAGAGGAATCCCAGTCTACCAAAACCCTCCCCCTAATTTCCCAATATTCGCTCAACGCCCTAATTTTATGGCTAATTACACCGGTACTCCAACAAGTTGTTCTTCTCCTTCTTCTAGTCCGTTCGATCATCACAATCACAATCAGTCTCACAATCATCATGGTCTGATAAGAACGAGATCTTCATTCTTGTCAAGGTTTCCAACAAAACGCAGCAGTAGAGCTCCTAGGATGCGCTGGACTACTACTCTTCATGCTCGTTTTGTTCACGCTGTTGAGCTCTTGGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTTATGGATGTGAAAGATCTCACTCTCGCTCATGTTAAATCGCATTTACAGATGTATCGGACGGTGAAGACGACAGATAGAGCAGCAGCTTCTTCAGGCCAGTCGGACGTTTATGAGAATGGGTCATCGGGCGATACGAGTGAAGATGTAATGTTAGATATACAAAACCCGATGAGAAGCTCAGCTGATCAGCAATCCACTCAACAAGCAAGAGAAAGCGTTCATCTTGATAATGATCATAATAACTATCATGGCCTTTGGACCAATTCTTCAAGAAGAGAAGTCTGGCTGCATGGGAAAACCAAGGACTCGTGTGAAACCCTATCATCTTTACAGAAAGATTTGGAGACGAAGAACTTCAGCCACGAGGTTTTATCGGATATAAGCTCAGCACAAATCCATTCACTGACTAATTTCAAGAAGCCCAATTTGGAGTTCACATTAGGCCGGGCAATATGA 1089 45.55 MMELFPAQPDLSLQISPPNTKISKPNSCFDLSLSSTSPRVLTDDHLHHDNSHHHHHHHHRQEQFLLHQQQHRPPLYHYHHHHLQGLSQLELNSFLNSSTTQPIRGIPVYQNPPPNFPIFAQRPNFMANYTGTPTSCSSPSSSPFDHHNHNQSHNHHGLIRTRSSFLSRFPTKRSSRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMLDIQNPMRSSADQQSTQQARESVHLDNDHNNYHGLWTNSSRREVWLHGKTKDSCETLSSLQKDLETKNFSHEVLSDISSAQIHSLTNFKKPNLEFTLGRAI 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3225338 3229440 + Conep12aG0050600.1 Cone12ag0486 449330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0486 362 MobiDBLite consensus disorder prediction 132 162 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 235 259 - -
Cone12ag0486 362 FunFam Myb family transcription factor 176 234 - -
Cone12ag0486 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 178 231 IPR006447 GO:0003677(InterPro)
Cone12ag0486 362 Pfam Myb-like DNA-binding domain 179 230 IPR001005 -
Cone12ag0486 362 Gene3D - 177 234 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 40 62 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 132 147 - -
Cone12ag0486 362 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 360 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cone12ag0486 362 SUPERFAMILY Homeodomain-like 175 231 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0249 Cone-Chr11:1183604 Cone12ag0486 Cone-Chr12:3225338 2.66E-50 dispersed
Cone12ag0486 Cone-Chr12:3225338 Cone18ag1238 Cone-Chr18:8793807 1.22E-45 dispersed
Cone12ag0486 Cone-Chr12:3225338 Cone8ag0489 Cone-Chr8:3447685 2.31E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44454 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0486 - - - 0.0