Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0486 | ATGATGGAACTATTTCCAGCACAACCAGATTTATCATTGCAAATCAGCCCTCCAAACACCAAAATCTCAAAACCCAATTCTTGTTTTGACCTCTCACTCTCCTCCACATCTCCAAGAGTACTCACCGACGACCACCTACACCACGACAACAGCCATCACCACCACCACCACCACCACCGCCAAGAGCAGTTCCTCCTCCATCAGCAGCAGCACCGCCCACCGCTATACCACTACCACCACCACCACCTACAAGGGCTGAGTCAATTGGAGCTCAATAGCTTCCTGAATAGTAGTACCACTCAACCCATAAGAGGAATCCCAGTCTACCAAAACCCTCCCCCTAATTTCCCAATATTCGCTCAACGCCCTAATTTTATGGCTAATTACACCGGTACTCCAACAAGTTGTTCTTCTCCTTCTTCTAGTCCGTTCGATCATCACAATCACAATCAGTCTCACAATCATCATGGTCTGATAAGAACGAGATCTTCATTCTTGTCAAGGTTTCCAACAAAACGCAGCAGTAGAGCTCCTAGGATGCGCTGGACTACTACTCTTCATGCTCGTTTTGTTCACGCTGTTGAGCTCTTGGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTTATGGATGTGAAAGATCTCACTCTCGCTCATGTTAAATCGCATTTACAGATGTATCGGACGGTGAAGACGACAGATAGAGCAGCAGCTTCTTCAGGCCAGTCGGACGTTTATGAGAATGGGTCATCGGGCGATACGAGTGAAGATGTAATGTTAGATATACAAAACCCGATGAGAAGCTCAGCTGATCAGCAATCCACTCAACAAGCAAGAGAAAGCGTTCATCTTGATAATGATCATAATAACTATCATGGCCTTTGGACCAATTCTTCAAGAAGAGAAGTCTGGCTGCATGGGAAAACCAAGGACTCGTGTGAAACCCTATCATCTTTACAGAAAGATTTGGAGACGAAGAACTTCAGCCACGAGGTTTTATCGGATATAAGCTCAGCACAAATCCATTCACTGACTAATTTCAAGAAGCCCAATTTGGAGTTCACATTAGGCCGGGCAATATGA | 1089 | 45.55 | MMELFPAQPDLSLQISPPNTKISKPNSCFDLSLSSTSPRVLTDDHLHHDNSHHHHHHHHRQEQFLLHQQQHRPPLYHYHHHHLQGLSQLELNSFLNSSTTQPIRGIPVYQNPPPNFPIFAQRPNFMANYTGTPTSCSSPSSSPFDHHNHNQSHNHHGLIRTRSSFLSRFPTKRSSRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMLDIQNPMRSSADQQSTQQARESVHLDNDHNNYHGLWTNSSRREVWLHGKTKDSCETLSSLQKDLETKNFSHEVLSDISSAQIHSLTNFKKPNLEFTLGRAI | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3225338 | 3229440 | + | Conep12aG0050600.1 | Cone12ag0486 | 449330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0486 | 362 | MobiDBLite | consensus disorder prediction | 132 | 162 | - | - | |
Cone12ag0486 | 362 | MobiDBLite | consensus disorder prediction | 235 | 259 | - | - | |
Cone12ag0486 | 362 | FunFam | Myb family transcription factor | 176 | 234 | - | - | |
Cone12ag0486 | 362 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 178 | 231 | IPR006447 | GO:0003677(InterPro) | |
Cone12ag0486 | 362 | Pfam | Myb-like DNA-binding domain | 179 | 230 | IPR001005 | - | |
Cone12ag0486 | 362 | Gene3D | - | 177 | 234 | - | - | |
Cone12ag0486 | 362 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
Cone12ag0486 | 362 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
Cone12ag0486 | 362 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 6 | 360 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Cone12ag0486 | 362 | SUPERFAMILY | Homeodomain-like | 175 | 231 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0249 | Cone-Chr11:1183604 | Cone12ag0486 | Cone-Chr12:3225338 | 2.66E-50 | dispersed | |
Cone12ag0486 | Cone-Chr12:3225338 | Cone18ag1238 | Cone-Chr18:8793807 | 1.22E-45 | dispersed | |
Cone12ag0486 | Cone-Chr12:3225338 | Cone8ag0489 | Cone-Chr8:3447685 | 2.31E-209 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44454 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0486 | - | - | - | 0.0 |