Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0486 ATGATGGAACTATTTCCAGCACAACCAGATTTATCATTGCAAATCAGCCCTCCAAACACCAAAATCTCAAAACCCAATTCTTGTTTTGACCTCTCACTCTCCTCCACATCTCCAAGAGTACTCACCGACGACCACCTACACCACGACAACAGCCATCACCACCACCACCACCACCACCGCCAAGAGCAGTTCCTCCTCCATCAGCAGCAGCACCGCCCACCGCTATACCACTACCACCACCACCACCTACAAGGGCTGAGTCAATTGGAGCTCAATAGCTTCCTGAATAGTAGTACCACTCAACCCATAAGAGGAATCCCAGTCTACCAAAACCCTCCCCCTAATTTCCCAATATTCGCTCAACGCCCTAATTTTATGGCTAATTACACCGGTACTCCAACAAGTTGTTCTTCTCCTTCTTCTAGTCCGTTCGATCATCACAATCACAATCAGTCTCACAATCATCATGGTCTGATAAGAACGAGATCTTCATTCTTGTCAAGGTTTCCAACAAAACGCAGCAGTAGAGCTCCTAGGATGCGCTGGACTACTACTCTTCATGCTCGTTTTGTTCACGCTGTTGAGCTCTTGGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTTATGGATGTGAAAGATCTCACTCTCGCTCATGTTAAATCGCATTTACAGATGTATCGGACGGTGAAGACGACAGATAGAGCAGCAGCTTCTTCAGGCCAGTCGGACGTTTATGAGAATGGGTCATCGGGCGATACGAGTGAAGATGTAATGTTAGATATACAAAACCCGATGAGAAGCTCAGCTGATCAGCAATCCACTCAACAAGCAAGAGAAAGCGTTCATCTTGATAATGATCATAATAACTATCATGGCCTTTGGACCAATTCTTCAAGAAGAGAAGTCTGGCTGCATGGGAAAACCAAGGACTCGTGTGAAACCCTATCATCTTTACAGAAAGATTTGGAGACGAAGAACTTCAGCCACGAGGTTTTATCGGATATAAGCTCAGCACAAATCCATTCACTGACTAATTTCAAGAAGCCCAATTTGGAGTTCACATTAGGCCGGGCAATATGA 1089 45.55 MMELFPAQPDLSLQISPPNTKISKPNSCFDLSLSSTSPRVLTDDHLHHDNSHHHHHHHHRQEQFLLHQQQHRPPLYHYHHHHLQGLSQLELNSFLNSSTTQPIRGIPVYQNPPPNFPIFAQRPNFMANYTGTPTSCSSPSSSPFDHHNHNQSHNHHGLIRTRSSFLSRFPTKRSSRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMLDIQNPMRSSADQQSTQQARESVHLDNDHNNYHGLWTNSSRREVWLHGKTKDSCETLSSLQKDLETKNFSHEVLSDISSAQIHSLTNFKKPNLEFTLGRAI 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3225338 3229440 + Conep12aG0050600.1 Cone12ag0486 449330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0486 362 MobiDBLite consensus disorder prediction 132 162 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 235 259 - -
Cone12ag0486 362 FunFam Myb family transcription factor 176 234 - -
Cone12ag0486 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 178 231 IPR006447 GO:0003677(InterPro)
Cone12ag0486 362 Pfam Myb-like DNA-binding domain 179 230 IPR001005 -
Cone12ag0486 362 Gene3D - 177 234 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 40 62 - -
Cone12ag0486 362 MobiDBLite consensus disorder prediction 132 147 - -
Cone12ag0486 362 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 360 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cone12ag0486 362 SUPERFAMILY Homeodomain-like 175 231 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0486 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0249 Cone-Chr11:1183604 Cone12ag0486 Cone-Chr12:3225338 2.66E-50 dispersed
Cone12ag0486 Cone-Chr12:3225338 Cone18ag1238 Cone-Chr18:8793807 1.22E-45 dispersed
Cone12ag0486 Cone-Chr12:3225338 Cone8ag0489 Cone-Chr8:3447685 2.31E-209 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44454 None None None None Cone TF