Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0487 ATGGAGCGAAATATCGCAAAGGCATTGGATAATAGCCCAAGAGTCTCACTTGCTGTAAAGAGGAAATGGGAAACCCAAGGTGTTGGACATTTCACTGAAGATACCAGCACAGTTTTACCTCCATGGTCATGCAAGTACGGAAATAAAAGGAAAATAGATGCACAGAAGAGTAATTTCATAAATTCTCAGACATCTTCTGCTTCTTTAATTCGATGTTACTTAAGATTTCTAAGGAGTGGGATTCCCCAACGCATAATGTTCTATCACAATGGTGAATGGATTGATTTCCCCCTGGATCTTCTTGATCCGGTAAGGAAAGATCTTCAGGTAAAGAAGGCGTCGGTTGAGGTTGAGATTAATGATCAGCACTATGTGCTTGATTTCTTGCATATGTATCATGTGGATTTGAAAACTGGGTTGCAAAAGCCCATTGCATGGATTGATGAAGCAGGTAGCTGCTTCTTTCCTGAAATTTATGCTACTGAAGATTGTTGCTGCCATGATAAAAGTTGCAAACACCAACACCCCAAACATGAGGAGCAATTCGGGCCCTGTGAAATAAAGCTGCAACTAGAAATTGAAATAAATGGAGGAGAACAGTCTCAATTGAAGGAATGTAGTGGGGAGTCAAATGCTGTTGTCAATGAAATTATCATTGATGGAAATCCTGCTATAAATAACTGTGTTATAGAGGTAGAGGGTAGCCACAATACGAAGTCCAATGCCAAAATGGACAAGGCTGTTGAGGAAATTCAAAACGTGGAGGTGGATTTAGGCCCTGGCATTGAATATATAGATGGAGTGCTAGATACTGAAACTGTCAGGAAAATGTTTCTTGTTGGAATGAGCTCCCTTGGAGGTGCAGACATAGTTGAGATATATCGTTGTAACAGTACTTCCATGAAAACCCGGTTGGAGCTTTTCGATAAGCAAATAGAGATTACCAAGCAATACCGTGGGGATGCCAATGTTCATTATGCTTGGCTTGCTTTCTCTAAACCTGACCTATCTACTTTATTGATGTATGGGCTTGGGTTTTGTGGAAAAACCATAACTAAGTCTGTATATGGCACTGGTGTCTACCTTACAGCTGCTAACTGTTCTGATGCCAGTGCAAGTTACTGTGATTATGACGATAATGGGGTGCGGCATATGGTTCTTTGCCGTATAATAATGGGAAGGATGGAGCTTCTTTGTCCTGGAACTGGACAATCCCATCCCAGTAGCAAGGAATTTGACAGTGGAGTGGATGATCTTGAAAATCCGAGGCATTATATAATATGGGATTTCAATATGAATACACACATATATCCAGAATATGTGCTTAGCTTTAAAATCCCTGAAGGGCATATGGTTGGAAGTGAAAGTAACCATGATGTTTCAGGGGTTACTACATTTTGTCCAGGCTCTCACGGCCAGTTGCATTTAGCATCGTCCTCAGGTGATATGGGGAGTAGTCAACAGGTTTCAGATTCTGAGAGATCGCCTGGAAAAGTTACTGGTCTGGGTTCTAGCCCTTTAAAAACCCCGAAATCTCCATTTATGCCTTTCCCTGTTTTGTTTGCTGCTATCTCAAGTGAAGTTAGTCCTCGTGACATGGAACTAGTTAACAAAAGCTATTCACAGTTTAGGGACAAGAAGATGACTCGAAATGAATTTATCAAAAGTTTAAGACTTCTCGTTGGAGACGAAATTTTGAGATCCACAATAACAAGTCTTCAGTGCAAGGCTCCAATTGGTAATCTATGGGTGACTAGCCTAATTTGA 1767 40.86 MERNIAKALDNSPRVSLAVKRKWETQGVGHFTEDTSTVLPPWSCKYGNKRKIDAQKSNFINSQTSSASLIRCYLRFLRSGIPQRIMFYHNGEWIDFPLDLLDPVRKDLQVKKASVEVEINDQHYVLDFLHMYHVDLKTGLQKPIAWIDEAGSCFFPEIYATEDCCCHDKSCKHQHPKHEEQFGPCEIKLQLEIEINGGEQSQLKECSGESNAVVNEIIIDGNPAINNCVIEVEGSHNTKSNAKMDKAVEEIQNVEVDLGPGIEYIDGVLDTETVRKMFLVGMSSLGGADIVEIYRCNSTSMKTRLELFDKQIEITKQYRGDANVHYAWLAFSKPDLSTLLMYGLGFCGKTITKSVYGTGVYLTAANCSDASASYCDYDDNGVRHMVLCRIIMGRMELLCPGTGQSHPSSKEFDSGVDDLENPRHYIIWDFNMNTHIYPEYVLSFKIPEGHMVGSESNHDVSGVTTFCPGSHGQLHLASSSGDMGSSQQVSDSERSPGKVTGLGSSPLKTPKSPFMPFPVLFAAISSEVSPRDMELVNKSYSQFRDKKMTRNEFIKSLRLLVGDEILRSTITSLQCKAPIGNLWVTSLI 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3246133 3250158 - Conep12aG0050800.1 Cone12ag0487 449331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0487 588 Gene3D - 268 446 - -
Cone12ag0487 588 Pfam RCD1-SRO-TAF4 (RST) plant domain 510 574 IPR022003 -
Cone12ag0487 588 ProSiteProfiles PARP catalytic domain profile. 235 465 IPR012317 GO:0003950(InterPro)
Cone12ag0487 588 MobiDBLite consensus disorder prediction 477 499 - -
Cone12ag0487 588 Coils Coil 237 257 - -
Cone12ag0487 588 SUPERFAMILY ADP-ribosylation 273 445 - -
Cone12ag0487 588 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 54 577 IPR044964 -
Cone12ag0487 588 MobiDBLite consensus disorder prediction 477 507 - -
Cone12ag0487 588 ProSiteProfiles RST domain profile. 508 579 IPR022003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0487 Cone-Chr12:3246133 Cone8ag0491 Cone-Chr8:3487782 1.83E-132 dispersed
Cone12ag0487 Cone-Chr12:3246133 Cone12ag0489 Cone-Chr12:3272508 5.05E-133 proximal
Cone4ag1262 Cone-Chr4:10401666 Cone12ag0487 Cone-Chr12:3246133 1.62E-51 transposed
Cone7ag0880 Cone-Chr7:6845762 Cone12ag0487 Cone-Chr12:3246133 5.12E-60 transposed
Cone12ag0487 Cone-Chr12:3246133 Cone8ag0490 Cone-Chr8:3472813 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g715 . . . . . . . . . . . . . . . . Cpe05g00159 . . . . . . . . . . . . . . . Cone12ag0487 . . . . . . Blo03g00880 . Bda07g00080 . . . . . . . . . . . . . . Bhi05g00449 . . Lac11g2448 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002998 3 6 2 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 2 53