Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0494 ATGTGTTCTTCAGAACAGCCTTCAACTATAAACCCAGGCCCAGTGAATCCTGACTGGTCAGGATTTCAGGCATATTCTCCTGTACCTCCACATGGATTATTGGCATCAAGTCCTCAAGCTCACCCATATATGTGGGGTATCCAGCCGGTTATGCCTCCTTACGGAACCCCTCCCCATCCCTATGTTGCAATGTATCCTCATGGTGGCATATACCCACATCCATCCATGCCTGCGGGATCATATCCTTTTAGCCCGTTCCCTGTGCCTTCTTCAAATGGCATTGTAGAGGCATCTGGAAATACACCTGGTTGCTTGGATGGAGATGGTGAGCCATCTGCGGTGAAGGGAAAATTGCCCATTAAAAGATTGAGAGGAAGTTTGGGTAGTTTAAATATGATTACAGGGAAAAACAATGGGCTTGGTAAAGTATACAGCCCATCTGCCAATGGAACTTGCTCTAAAAGTGCTACAAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGGTGGCAATTCTGAGAATGATTTGGATATACAACTTAAGTCGGGTAGTGGGCAAGACTCTTTGGAAGGCAAAGCCAATCAGAATGGAGGATCAAATACACCTCATTCAAAGGTGAATCGATCAAAGGCCATCTTGCCTACCCCACCAGTTGTACCCAGTCCAACTACCAACTTAAATATTGGAATGGATTATTGGGTTTCTCCAACATCATCTGCACTTCGCGGGAAGGCTCCTCCAACTCCAGTTCCAGGAGGAATGATTACTGGATCACGAGATGGGGCTCAATCACAGCTTTGGCCACAGGATGAAAGAGAACTTAAAAGACAGAGAAGGAAGCAATCAAATAGGGAATCAGCTCGGCGATCACGGTTGCGTAAGCAGGCCGAATGTGATGAGCTAGCCATTCGTGCTGAAGCCATGAGAGAAGAAAATGCAAGCCTTACATCCAAAGTGAATAGAATGAGGAGTGAGTATGAGCAGCTTCTTCTAGAGAATTCCTCTCTCAAGGAGAGATTAGAAGAAAATCCCGGAAATGAGGACTCAAGATCTGGCCCGAAAGATAACAAAAAGGAGCAATGA 1080 45.74 MCSSEQPSTINPGPVNPDWSGFQAYSPVPPHGLLASSPQAHPYMWGIQPVMPPYGTPPHPYVAMYPHGGIYPHPSMPAGSYPFSPFPVPSSNGIVEASGNTPGCLDGDGEPSAVKGKLPIKRLRGSLGSLNMITGKNNGLGKVYSPSANGTCSKSATSASEGTSEGSGGNSENDLDIQLKSGSGQDSLEGKANQNGGSNTPHSKVNRSKAILPTPPVVPSPTTNLNIGMDYWVSPTSSALRGKAPPTPVPGGMITGSRDGAQSQLWPQDERELKRQRRKQSNRESARRSRLRKQAECDELAIRAEAMREENASLTSKVNRMRSEYEQLLLENSSLKERLEENPGNEDSRSGPKDNKKEQ 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3332470 3338559 - Conep12aG0051500.1 Cone12ag0494 449338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0494 359 PANTHER G-BOX-BINDING FACTOR 3-RELATED 5 354 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone12ag0494 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 277 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0494 359 Pfam Disordered region downstream of MFMR 117 239 - -
Cone12ag0494 359 MobiDBLite consensus disorder prediction 331 359 - -
Cone12ag0494 359 MobiDBLite consensus disorder prediction 238 294 - -
Cone12ag0494 359 SUPERFAMILY Leucine zipper domain 273 328 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0494 359 MobiDBLite consensus disorder prediction 329 359 - -
Cone12ag0494 359 SMART brlzneu 270 334 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0494 359 Coils Coil 290 338 - -
Cone12ag0494 359 Pfam bZIP transcription factor 270 332 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0494 359 Pfam G-box binding protein MFMR 4 77 IPR012900 -
Cone12ag0494 359 MobiDBLite consensus disorder prediction 148 224 - -
Cone12ag0494 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 272 335 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0494 359 MobiDBLite consensus disorder prediction 148 207 - -
Cone12ag0494 359 Gene3D - 273 342 - -
Cone12ag0494 359 CDD bZIP_plant_GBF1 275 325 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0471 Cone-Chr11:2377931 Cone12ag0494 Cone-Chr12:3332470 5.32E-34 dispersed
Cone12ag0494 Cone-Chr12:3332470 Cone8ag0602 Cone-Chr8:5238875 1.69E-134 dispersed
Cone12ag0494 Cone-Chr12:3332470 Cone8ag0496 Cone-Chr8:3532227 4.80E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44455 PF00805 Pentapeptide 3.30E-07 CL0505 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0494 K09060 - cit:102623229 466.463