Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0501 ATGGAGAATGAAGAAAGAGAGAGCTGGAGAGAATTAGCAAGAAAAATGCTTCCACCTGGATCTTCTCTCCCAGAAGATGCTAACCTCGATTACTCCATTGCAGTGGAGTATGAGGGCCCACTTGTTCTACGAGAAATTCCTAGAGTGGAACCACTCAATGTAAATTCCCATAATCAAAACCCTTTAGCAGAACCTGTATCCGAATCAAGAAGATCCGTTTCAAATGCGGGCCCACCAATAGTCGAGCCTATACCTTTACCAATATCCCATATTTCCGGAGTAACAACCTTGCCCGATCAAAGTCCGAGGTTGTCTCTAAGTTCGGAATCTGTCGTGTCGGTCTTACAAAACCCAGAATCTTCTTCCCCTTCACCTTCTGCTTCTCCTGAATCGGGCCATAACCCTAAAAAACAAGTGGGTCATAATGAGGTGAGGCGGGGTCCGGTTGTAACTTTTAATACGGTGGAGAGAACAGATAGGAAAGAAGTTATGGTTGAAAAGCCGATTTATCCAGAATATATTGGAGTTTCAAATGAGAAGAAGAGTAGTAAGAAGAAGAAGAAGAAGAGTAGGGTTTGCTATAGGTGTGGAAAAGGGAAGTGGGAGAGTAAGGAGTCCTGTTTGGTTTGCGATTCAAAGTATTGTAGTAATTGTGCGCTTAGGGCAATGGGGTCTATGCCTGAAGGAAGAAAGTGTGTGACTTGTATTGGTGAGCCAATTGATGAATCAAAGAGGTTGAGGTTGGGAAAGAATTCTAGGGTTTTGTCGAGGTTGTTAAGTCCTTTGGAAGTTAAGCATATTATGAAAGCGGAAAGAGAGTGCTTGGCTAATCAGCTTAGACCCGAGCAGCTTATTGTGAATGGTTTAGCTTTGAAACCGGAAGAGATGGCAGAGTTACTAGGATGCCCTTTGCCTCCGAGGAAGTTGAAGCCGGGTAGATATTGGTATGACAAAGAATCTGGTCTTTGGGGAAAAGAAGGGGAAAAACCGGATAGAATCATAAGTTCAAATTTGAACTTTACTGGTAAACTTAGCCCTCATGCAAGCAATGGAAATACTGAAGTTTACATAAATGGACGGGAGATAACAAAAATTGAATTGAGGGTGCTTAAGTTGGCAAATGTTCAATGTCCTCGTGACACTCATTTTTGGGTCTATGATGATGGTCGATATGAAGAGGAAGGTCAGAATAATATCCGAGGAAACATTTGGGAGAAGGCATCAACACGGCTTATATCTGCTTTGTTCTCTTTGCCGGTGCCCCACGGACAATCCCATGGAGTAAGAGATGAAGCTAGCAATTATACTGTGGGTCCAAACTATTTGGAACAGAAAAAGATTCAGAAGCTTCTTCTTCTTGGAATTCATGGCTCTGGAACTAGCACTATCTTCAAGCAGGCAAAATTTTTGTATGGAAACAGGTTTAGTACAGAAGAGTTACAGGGGATTAAGCTGATGATCCAGAGTAACATGTATAGATATCTCAGCATTCTACTTGATGGACGAGAACGCTTTGAAGAGGAGGCCATGAATAGGATGAAAGGACTAGACTCTTATGAACAGGTCACTCAAGGAGGGGAAGAGTTTGACCCAAATGAAGCTCGTCAATGTGCATACTCCATCAACCCAAGATTGAAGCATTTTTCGGACTGGCTTCTGGATATAATTGCAACTGGTGACTTGGATGCATTCTTCCCTGCTGCTACACGCGAGTATGCTCCTTTAGTTGAAGAGTTGTGGAAAGATCCTGCTATTCAAGAAACTTACGGAAGGAAAGACGAGCTCCATTTCCTTCCAGATGTTGCAGAGTACTTCTTAAGTCGGGCTGTGGAAGTTTCAAGTAATGAATATGAGCCTTCAGAAAGAGACATTCTTTATGCAGAAGGTGTAAGTCAAGGAAATGGCTTGGCTTTCATGGAATTCTCACTAGATGACCGTAGCCCAATGTCTGAAACCTACACGGATAATTTGGAAGCTCCACCCTCACCTCTTGCCAAATACCAACTTATAAGACTAAATGCAAATGGAATGAACGAAGGATGTAAATGGGTCGAAATGTTTGAAGATGTCCGGGTCGTAGTCTTCTGCATCGCTCTAAGCGACTTTGACCAAGTGCTCCCTACTCCAGAAAATTCTGGTAATGGGACCATACTTCAAAACAAAATGTTACAAAGCAAAGAACTCTTTGAGACCATGATAAGACACCCATGTTTCAAAGACACCCCATTTGTTCTAATCCTCAACAAGTACGATCTTTTTGAGGAAAAGATCAACCGGGTTCCGCTCAGCGCATGTGAATGGTTCAATGATTTCAGCCCAGTCCTGGCCCATCAGAGGAACCAGTCCTTGGCCCACCAGGCCTATTACTATGTGGCAATGAAGTTTAAGGACCTTTATGCTTCTCTTACGGTTAGTAGGAAGCTTTTTGTGTGGCAAGCTCGGGCAAGGGACAGGGTTACGGTTGATGAGGCGTTTAAGTATGTAAGAGAGGTTGTTAAGTGGGACGAGGAGAAGGAGGAGTATTGTGGGGCTGGAGGACAAGAGGATTCGTTTTATAGTACGGATCTGAGCACCTCTCCCTATATCAGACAAGAATAA 2598 43.19 MENEERESWRELARKMLPPGSSLPEDANLDYSIAVEYEGPLVLREIPRVEPLNVNSHNQNPLAEPVSESRRSVSNAGPPIVEPIPLPISHISGVTTLPDQSPRLSLSSESVVSVLQNPESSSPSPSASPESGHNPKKQVGHNEVRRGPVVTFNTVERTDRKEVMVEKPIYPEYIGVSNEKKSSKKKKKKSRVCYRCGKGKWESKESCLVCDSKYCSNCALRAMGSMPEGRKCVTCIGEPIDESKRLRLGKNSRVLSRLLSPLEVKHIMKAERECLANQLRPEQLIVNGLALKPEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFTGKLSPHASNGNTEVYINGREITKIELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRLISALFSLPVPHGQSHGVRDEASNYTVGPNYLEQKKIQKLLLLGIHGSGTSTIFKQAKFLYGNRFSTEELQGIKLMIQSNMYRYLSILLDGRERFEEEAMNRMKGLDSYEQVTQGGEEFDPNEARQCAYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYGRKDELHFLPDVAEYFLSRAVEVSSNEYEPSERDILYAEGVSQGNGLAFMEFSLDDRSPMSETYTDNLEAPPSPLAKYQLIRLNANGMNEGCKWVEMFEDVRVVVFCIALSDFDQVLPTPENSGNGTILQNKMLQSKELFETMIRHPCFKDTPFVLILNKYDLFEEKINRVPLSACEWFNDFSPVLAHQRNQSLAHQAYYYVAMKFKDLYASLTVSRKLFVWQARARDRVTVDEAFKYVREVVKWDEEKEEYCGAGGQEDSFYSTDLSTSPYIRQE 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3391111 3397896 + Conep12aG0052200.1 Cone12ag0501 449345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0501 865 MobiDBLite consensus disorder prediction 1 26 - -
Cone12ag0501 865 Gene3D - 477 628 IPR011025 GO:0007165(InterPro)
Cone12ag0501 865 MobiDBLite consensus disorder prediction 99 135 - -
Cone12ag0501 865 MobiDBLite consensus disorder prediction 850 865 - -
Cone12ag0501 865 MobiDBLite consensus disorder prediction 52 74 - -
Cone12ag0501 865 FunFam Extra-large guanine nucleotide-binding protein 3 642 841 - -
Cone12ag0501 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 834 IPR027417 -
Cone12ag0501 865 Gene3D - 646 840 IPR027417 -
Cone12ag0501 865 SMART galpha_1 406 844 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 CDD G-alpha 448 835 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 MobiDBLite consensus disorder prediction 99 148 - -
Cone12ag0501 865 SUPERFAMILY FYVE/PHD zinc finger 179 235 IPR011011 -
Cone12ag0501 865 SUPERFAMILY Transducin (alpha subunit), insertion domain 475 627 IPR011025 GO:0007165(InterPro)
Cone12ag0501 865 PRINTS Alpha G protein (transducin) signature 690 718 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 PRINTS Alpha G protein (transducin) signature 617 639 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 PRINTS Alpha G protein (transducin) signature 449 464 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 PRINTS Alpha G protein (transducin) signature 743 752 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 263 833 IPR001019 GO:0001664(PANTHER)|GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005834(PANTHER)|GO:0007186(InterPro)|GO:0007188(PANTHER)|GO:0019001(InterPro)|GO:0031683(PANTHER)|GO:0031683(InterPro)
Cone12ag0501 865 MobiDBLite consensus disorder prediction 51 86 - -
Cone12ag0501 865 FunFam Extra-large guanine nucleotide-binding protein 3 477 628 - -
Cone12ag0501 865 ProSiteProfiles G-alpha domain profile. 446 844 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone12ag0501 865 MobiDBLite consensus disorder prediction 845 865 - -
Cone12ag0501 865 Pfam G-protein alpha subunit 443 831 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0501 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0501 Cone-Chr12:3391111 Cone19ag0314 Cone-Chr19:2461288 0 dispersed
Cone12ag0501 Cone-Chr12:3391111 Cone8ag0500 Cone-Chr8:3559470 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62