Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0512 ATGAATAGTTCTACATCATCTTCAGTTATCTTCAGCTTGTTCACTTTTCTGGGTCTAATGATCATGATGAGCACAACGTTAGGCTATGCCCATCAACTTTCTCCATCATTTTATGACAATACTTGTCCTAATGGTTTAAGTACCATTAGGACAGCTATTCGGAAAGCAGTCTCTGCCGAGCGTCGGATGGCGGCGTCTCTCATTCGCGTTCATTTCCATGACTGCTTTGTTCAGGGTTGTGATGCATCAATTTTACTGGATGATACTCCTTCAATGATAGGAGAACAAGGTGCTCTTCCTAACAAGGGTTCTATAAGAGGTTTGGGAGTCATCAGCAATGCTAAAATCCAAGTAGAAAAGATCTGCCCTGGAGTTGTTTCTTGTGCTGACATTATTGCTATTGCAGCAAGGGATGCATCAGTTGCTGTGGGCGGTCCATCATGGACGGTAAAGCTTGGAAGAAGAGATTCCACAAGCGCAAGTAAAACTCAAGCAGAAAGTCAACTTCCAAGTTTCCTAGACGATGTTAAAACGCTCATCTCTTCCTTTTCAAGGAAGGGTCTTAGTGCAAGAGACATGGTTGCCCTTTCAGGCTCGCATACCATAGGACAAGCCCAGTGCGTCACGTACCGTCAAAGGATCTATGAAAACGGGACCGACATCGATCCGGGCTTTGCTTCTACTCGCAGACGCCGTTGTCCATCAGCCCTCAATGATGGAAACACGATTTTGGCCCCATTGGATTTGGTCACGCCAAATTCCTTTGACAACAATTACTTCAAGAATTTGATTCAAAAGAAGGGTCTTCTTCCATCCGATCAGGTTCTTTTCAGTGGAGGACCTACAGACCAGATTGTTTCGGAGTATAGTAAGAGTCCAGCCACATTTATGTCGGATTTTGCTTCTGCCATGATTAAAATGGGAGATATTCAACCTCTTACAGGCTATCTCGGACAAATTAGGAAGATATGTAGCGCAGTTAACTAA 987 43.97 MNSSTSSSVIFSLFTFLGLMIMMSTTLGYAHQLSPSFYDNTCPNGLSTIRTAIRKAVSAERRMAASLIRVHFHDCFVQGCDASILLDDTPSMIGEQGALPNKGSIRGLGVISNAKIQVEKICPGVVSCADIIAIAARDASVAVGGPSWTVKLGRRDSTSASKTQAESQLPSFLDDVKTLISSFSRKGLSARDMVALSGSHTIGQAQCVTYRQRIYENGTDIDPGFASTRRRRCPSALNDGNTILAPLDLVTPNSFDNNYFKNLIQKKGLLPSDQVLFSGGPTDQIVSEYSKSPATFMSDFASAMIKMGDIQPLTGYLGQIRKICSAVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3487297 3488483 - Conep12aG0053300.1 Cone12ag0512 449356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0512 328 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 FunFam Peroxidase 170 307 - -
Cone12ag0512 328 PANTHER PEROXIDASE 72-RELATED 20 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Cone12ag0512 328 Gene3D Peroxidase, domain 2 170 307 - -
Cone12ag0512 328 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
Cone12ag0512 328 Gene3D - 37 328 - -
Cone12ag0512 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 CDD secretory_peroxidase 32 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone12ag0512 328 ProSiteProfiles Plant heme peroxidase family profile. 32 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 Pfam Peroxidase 50 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone12ag0512 328 FunFam Peroxidase 36 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0512 Cone-Chr12:3487297 Cone5ag0153 Cone-Chr5:650032 3.45E-120 dispersed
Cone12ag0511 Cone-Chr12:3481665 Cone12ag0512 Cone-Chr12:3487297 3.73E-234 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0512 K00430 - rcu:8265433 443.736