Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0525 | ATGTTTACATGCATGACAGCATGTACGAAGCAAACACAGGAGGATGGTGGAGACGACGAACATGGAGGAGCGCGTGGCGGTGGCAGCGGCACACCAAGTACGAAGGAAGCTGTCAAAAGTCTGACGGCGCAGATAAAGGACATGGCTTTGAAAGTTTCGGGTACTTATCGACAATGCAAACCTTGTACGGGGTCCACAAGCTACAAGAAAGGACATAGGCCCTACCCGGATTTTGATACAGCTTCTGAGGGGGTCCCATATCCCTTCATTGGAGGTGCAAGCTCAAGTTCTACACCTGCATGGGATTTTCCAAGTGCTAATCATCACCAAAATACAAGGTCGGAATCTAGATTTGCCGCAGACCGCACCCCTGGAGGGGGATTTGAGTCTTTTGATGTAGTGCTTGATGATGAGCCTAAAGAATGGATGGCTCAGGTTGAGCCTGGAGTTCATATCACTTTTGTTTCTCTTCCAAATGGTGGAAACGACCTTAAACGAATTCGTTTTAGCCGAGAAATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGCGAGAACTATGACCGGATTATGGAGCTTTATAATGTTCAGAGATTCAATCGACAAGCCCTTCAGACTCCGCCAAGGTCCGAAGATGGGAGAGACTCTTCCTACTCGAGGATGGGATCAGCAATGGAGAGTCCAATGGGTTCTTCTTTACACAAGGATTGGACTCCAAGGAGCCACTACAAACCATCATTTTCTGGGAACAACAAAGGCTATTTCCCTTCTGATTCTATGGACCAAGGTGGGACACACCATTATAATGCTGCTGGCTCAAGTGCTTATGCTGGTGGGCCCAGGGGGATCGAAACACCGTCTCTCGAGGCTTCCCGGACAACAACCTCGTCTCGAGATGAGGCTTCGGTCTCTGTCAGCAATGCAAGTGATCTTGACTCGGAGTGGGTCGAGGAAGACGAGCCCGGAGTTTATATTACGATTAGACAGCTGTCTGATGGCAGTAGAGAGCTCCGCCGTGTTAGATTTAGCCGTGAAAGATTTGGTGAAGTACATGCAAAGATGTGGTGGGAAGACAACAGAGAGAGAATACAAGCACAATACCTTTAA | 1107 | 48.15 | MFTCMTACTKQTQEDGGDDEHGGARGGGSGTPSTKEAVKSLTAQIKDMALKVSGTYRQCKPCTGSTSYKKGHRPYPDFDTASEGVPYPFIGGASSSSTPAWDFPSANHHQNTRSESRFAADRTPGGGFESFDVVLDDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALQTPPRSEDGRDSSYSRMGSAMESPMGSSLHKDWTPRSHYKPSFSGNNKGYFPSDSMDQGGTHHYNAAGSSAYAGGPRGIETPSLEASRTTTSSRDEASVSVSNASDLDSEWVEEDEPGVYITIRQLSDGSRELRRVRFSRERFGEVHAKMWWEDNRERIQAQYL | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3632272 | 3635632 | + | Conep12aG0054600.1 | Cone12ag0525 | 449369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0525 | 368 | ProSiteProfiles | BRX domain profile. | 140 | 195 | IPR013591 | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 287 | 306 | - | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 203 | 237 | - | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 254 | 269 | - | - | |
| Cone12ag0525 | 368 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 313 | 367 | IPR013591 | - | |
| Cone12ag0525 | 368 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 140 | 194 | IPR013591 | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 254 | 306 | - | - | |
| Cone12ag0525 | 368 | PANTHER | PROTEIN BREVIS RADIX-LIKE 1 | 1 | 368 | IPR044532 | - | |
| Cone12ag0525 | 368 | ProSiteProfiles | BRX domain profile. | 313 | 368 | IPR013591 | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 98 | 124 | - | - | |
| Cone12ag0525 | 368 | MobiDBLite | consensus disorder prediction | 98 | 113 | - | - | |
| Cone12ag0525 | 368 | Pfam | Transcription factor BRX N-terminal domain | 30 | 62 | IPR027988 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0525 | Cone-Chr12:3632272 | Cone4ag0810 | Cone-Chr4:5144668 | 4.91E-93 | dispersed | |
| Cone12ag0525 | Cone-Chr12:3632272 | Cone8ag0525 | Cone-Chr8:3789135 | 1.76E-255 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0525 | - | - | - | 0.0 |