Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0529 ATGAAGCATAAAGATCATAAACCAGGAACTCATCCAGAGAAAAGTTCAAAGATCGTCTCTATAAGCATTCTATTCGTTTTGCTATGTGGATTTTCATTCTACCTTGGTGGAATCTTTTGTTCCAAGAGGGATACATTCCACATGAAAAACTTGGTCAAGGGCAAAAACTCGGTCCAATCTCCTATGGGGTCCTCTGTTACTCCTCTGCAGATTGAATCCGTTACCTTCCCTGAATGTAGCAATGACTATCAAGACTATACCCCTTGCACAGATCCAAAGAGGTGGAGGAAGTATGGTCTTCATAGGCTTACTTTCATGGAACGCCATTGCCCTCCAGTTTTTGAGAGGAAGGAATGCCTAGTTCCACCCCCAGATGGATATAAAGTACCCATTAAGTGGCCTAAGAGTAGGGATGAATGTTGGTACAGGAATGTGCCATATGACTGGATTAACAAGCAGAAGTCTAATCAAAATTGGCTGAGGAAAGAAGGAGATAAGTTTCTCTTCCCTGGTGGTGGTACTATGTTTCCCAGGGGTGTGGGCGATTATGTTGACTTGATGCAAGATCTTATACCAGAAATGAAAGATGGTACTGTTCGGACTGCCATTGATACTGGTTGTGGGGTTGCAAGTTGGGGAGGTGATATGCTAGATCGGGGAATTTTAACGCTTTCTCTTGCCCCAAGAGATAACCATGAAGCTCAGGTCCAGTTTGCATTGGAACGTGGCATTCCGGCAATCCTTGGCATCATTTCAACACAAAGGCTTCCTTTTCCATCGAGCTCCTTTGACATGGCTCACTGCTCAAGATGCCTTATTCCCTGGACTGAGTTCGGAGGAATATACCTACTAGAAATCAACCGTATACTCCGTCCGGGAGGCTTCTGGGTCCTCTCAGGCCCACCCGTCAACTACGAGAACCGCTGGCGTGGATGGAACACAACCGTTGAAGAACAAAAGTTGGACTACGAAAAGCTACAAGATCTCCTAACCTCAATGTGCTTCAAACTATACAACAAAAAGGACGATATTTCCATCTGGCAAAAGACTTCCGATAACAGTTGCTATGAAAAGCTCTCCACCCCAGATGCCTACCCTCCCAAATGTGATGATAGCATAGAATCCGACTCAGCTTGGTATACTCCCCTTAGAGCTTGTGTGGTTGCTCCAAGCACCAAGCTCAAGAAAACTGCATTACTGGCCGTGCCAAAATGGCCGGAGCGGTTGCATGTTACACCCGAGAGAATCTCAGGTATTCACGGTGGGAGTGCTAGTGCTTTCAATCATGATGATAGTAAGTGGAAGAGCAGGGTGAAGCACTACAAGAAGTTGCTTCCAGCCATTGGGACTGATAAGATTAGGAATGTTATGGATATGAATACGGTTTATGGAGGTTTTGCTGCTGCTTTGATCAATGATCCTTTGTGGGTCATGAATGTTGTTTCATCTTATGCTGCTAACACACTTCCCGTGGTCTATGATCGGGGTCTTATTGGAACTTATCAGGACTGGTGCGAAGCTTTTTCAACCTATCCTAGAACTTATGATCTTCTCCATCTTGATGGACTTTTCACTGCAGAAGGCCAAAGATGTGATATGAAGTTTGTGCTCTTGGAGATGGACCGGATCCTCCGCCCTAATGGGTATGCAATTATCCGAGAATCCAGTTACTTTGTGGATGCCTTGGCTACCATTGCAAAGGGCATGAAATGGACTTGTCATAAAGAAGACACTGAATATAAGCTTGAAAAGGAGAAGGTATTGATTTGCCAGAAAAAGCTCTGGTATTCTTCTAACCAGAGTTCAAGATGA 1812 44.59 MKHKDHKPGTHPEKSSKIVSISILFVLLCGFSFYLGGIFCSKRDTFHMKNLVKGKNSVQSPMGSSVTPLQIESVTFPECSNDYQDYTPCTDPKRWRKYGLHRLTFMERHCPPVFERKECLVPPPDGYKVPIKWPKSRDECWYRNVPYDWINKQKSNQNWLRKEGDKFLFPGGGTMFPRGVGDYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDMLDRGILTLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSSSFDMAHCSRCLIPWTEFGGIYLLEINRILRPGGFWVLSGPPVNYENRWRGWNTTVEEQKLDYEKLQDLLTSMCFKLYNKKDDISIWQKTSDNSCYEKLSTPDAYPPKCDDSIESDSAWYTPLRACVVAPSTKLKKTALLAVPKWPERLHVTPERISGIHGGSASAFNHDDSKWKSRVKHYKKLLPAIGTDKIRNVMDMNTVYGGFAAALINDPLWVMNVVSSYAANTLPVVYDRGLIGTYQDWCEAFSTYPRTYDLLHLDGLFTAEGQRCDMKFVLLEMDRILRPNGYAIIRESSYFVDALATIAKGMKWTCHKEDTEYKLEKEKVLICQKKLWYSSNQSSR 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3678684 3683900 - Conep12aG0055000.1 Cone12ag0529 449373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0529 603 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 18 595 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Cone12ag0529 603 FunFam probable methyltransferase PMT21 174 352 - -
Cone12ag0529 603 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 85 592 IPR004159 GO:0008168(InterPro)
Cone12ag0529 603 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 436 572 IPR029063 -
Cone12ag0529 603 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 313 IPR029063 -
Cone12ag0529 603 Gene3D Vaccinia Virus protein VP39 175 355 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0529 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0529 Cone-Chr12:3678684 Cone8ag0573 Cone-Chr8:4569164 1.35E-186 dispersed
Cone12ag0529 Cone-Chr12:3678684 Cone8ag0527 Cone-Chr8:3827092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g882 . . . . . Bpe07g00056 Bma07g00965 Bma14g00112 . . . . . . . . Cpe02g00603 . . . . . . . . . . . . . . Cone8ag0527 Cone12ag0529 . . . . . . Blo03g00841 . Bda07g00138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003245 2 3 2 3 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 6 4 1 50