Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0531 | ATGGCAGCGGCGGGGGTGGAACTGACGGATGGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGGCGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGGCGGTGAACACTCAGGCGCATCACAGTAGCACCGAAAGGTTCAGGCTTTTGCTTTCCGATGGGACGCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCTGTTGTTCAGCTGAGAGAATATGTTTGTAATCCCATTCAAGATCGACTGATAATAATTGTAATTGAAATGGATCTAATTCTGGAAAAATGTGATATCATTGGTGAACCAGTAGCAGCACCAAAATTGATAAGTGGAAGTGAGAGTGGTGTTCCATCAGCCTCTGGGCTGATTAGTAAACCAAATATTTCTGGAGCCGCTCCTCGGCAATCTAGAATGAACCAACTGGGTAGTTCATTGAACAATTCTGATTCTGGAAGATTTGGTGTGTCAAATGCTCCTCCTCTCTACCCTAAAACGGAGAATGCAACTCGGTTTCATGGCCCAACACCTTTAAGTGTGTCATCTAATGATCAGAATTTGAGTGTTAATAACCCAAGAATGGATGTTCCACAACCACTGCTGAATAATTATGGTCGTCAATCTCCTCAGCCATATAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCACCAAGGATAATACCAATTTCTGCTCTTAATCCTTACCAGGGAAGATGGACAATCAAGGCTCGAGTGACTGCAAAAGCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGGGTAACCTGCTTCAATGCTGTTGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCAAATGATCTGGAGATTTATTTGGAGACTACATCTACAGTACAACCATGCTTTGAGGATGACAAGTGCATTCCCCAACAGCAGTTTCATTTCCGTCCCATAAGTGATGTTGAGGGCCTGGATAACAACAGTGTTGTGGATGTAATTGGTGTAGTCTCATTTATCAGTCCTTCAACTTCTATAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCTCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCAATGTAGATGGGCAAAGGCTGCAAACCATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCTGGTAGAGTCAGTGAATTCAATGGGAAAGCCGTGGGCACTATTTCTACAAGTCAGCTTTTCATAGAGCCAGATTTTCCTGAAGCCCACAGACTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACATCCCGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTCGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAATAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGTCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTAACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTGCCGGCCAAGAGTTTATATTATCTGAAATATGAAGAGCAAGATGATGAGAAATTCGCAGAGATTATCCGTAAGGTTCTATTCACTAAATACAACTTTAAGCTGAAAGTGAAGGAAGAGACATACAGTGATGAGCAGAGGATAAAGTCCACAGTTGTCAAATCAGAAAGGGTAAATTTTTCAGCCGAGTCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTTGAGAACTCGGGTTCTTTCCCCTCAAGAGCAGAAACTACCCAAAATGACCCTGGAATGTACCAAGCTGCAGTTGGAAACCTCACTAATAGACTCCCTATAACAGTTGGAAGTATTGGAACTAGACCACCTATAGTGGCCGGAAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAACACAGCTCATCTAATCAAATGGGTCACTATGGAAACCAGTATAATAGTTCGATTGGTCCTTCAACTGGTCCTACTAATTCCTATATGTACTGTAACAGCTGTGGGGGTAGTGGTCACAGCTCGGTCAACTGCCCGAGTATAATGAATAGTCCTGTACAGCAGCCTGTGGGAGGGAATTCTTCGAATACATTTTCTGGTCCTTCCAGTGGTGGGTCCGGTGAATGCTATAAATGCAACCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAACTTATGGTGGTCATAGTGGTGGGTCTGGCGAATGCTATAAATGTCATCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA | 2694 | 43.65 | MAAAGVELTDGAVMVICKGDSTAEKYQPVVQVVDLKAVNTQAHHSSTERFRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNPIQDRLIIIVIEMDLILEKCDIIGEPVAAPKLISGSESGVPSASGLISKPNISGAAPRQSRMNQLGSSLNNSDSGRFGVSNAPPLYPKTENATRFHGPTPLSVSSNDQNLSVNNPRMDVPQPLLNNYGRQSPQPYNQPPPMYVNKGPVARNEAPPRIIPISALNPYQGRWTIKARVTAKAELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLETTSTVQPCFEDDKCIPQQQFHFRPISDVEGLDNNSVVDVIGVVSFISPSTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCNVDGQRLQTMCDSGAFPVLAVKSGRVSEFNGKAVGTISTSQLFIEPDFPEAHRLKDWFEKEGRNIPSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWIIVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKSERVNFSAESRYLLELMDKLKVENSGSFPSRAETTQNDPGMYQAAVGNLTNRLPITVGSIGTRPPIVAGNFSGNSNSNPGREHSSSNQMGHYGNQYNSSIGPSTGPTNSYMYCNSCGGSGHSSVNCPSIMNSPVQQPVGGNSSNTFSGPSSGGSGECYKCNQPGHWARDCPGLGGTVPPTYGGHSGGSGECYKCHQPGHWARDCPGLGGTVPPAYGGGSGGYAARR | 897 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3699430 | 3702987 | - | Conep12aG0055200.1 | Cone12ag0531 | 449375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0531 | 897 | CDD | RPA1_DBD_C | 517 | 690 | IPR047192 | - | |
| Cone12ag0531 | 897 | Gene3D | - | 499 | 691 | IPR012340 | - | |
| Cone12ag0531 | 897 | Pfam | OB-fold nucleic acid binding domain | 262 | 345 | IPR004365 | GO:0003676(InterPro) | |
| Cone12ag0531 | 897 | CDD | RPA1_DBD_A | 251 | 354 | - | - | |
| Cone12ag0531 | 897 | ProSiteProfiles | Zinc finger CCHC-type profile. | 828 | 842 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | SMART | c2hcfinal6 | 827 | 843 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | SMART | c2hcfinal6 | 783 | 799 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | SMART | c2hcfinal6 | 861 | 877 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | Pfam | Replication protein A OB domain | 372 | 475 | IPR031657 | - | |
| Cone12ag0531 | 897 | SUPERFAMILY | Nucleic acid-binding proteins | 367 | 496 | IPR012340 | - | |
| Cone12ag0531 | 897 | Pfam | Replication factor-A protein 1, N-terminal domain | 8 | 108 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cone12ag0531 | 897 | SUPERFAMILY | Retrovirus zinc finger-like domains | 849 | 881 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | Gene3D | - | 248 | 357 | IPR012340 | - | |
| Cone12ag0531 | 897 | Gene3D | - | 6 | 121 | IPR012340 | - | |
| Cone12ag0531 | 897 | MobiDBLite | consensus disorder prediction | 131 | 202 | - | - | |
| Cone12ag0531 | 897 | SUPERFAMILY | Nucleic acid-binding proteins | 248 | 359 | IPR012340 | - | |
| Cone12ag0531 | 897 | NCBIfam | replication factor-a protein 1 (rpa1) | 195 | 690 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone12ag0531 | 897 | SUPERFAMILY | Nucleic acid-binding proteins | 514 | 691 | IPR012340 | - | |
| Cone12ag0531 | 897 | MobiDBLite | consensus disorder prediction | 739 | 772 | - | - | |
| Cone12ag0531 | 897 | Gene3D | - | 361 | 498 | IPR012340 | - | |
| Cone12ag0531 | 897 | CDD | RPA1N | 11 | 108 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Cone12ag0531 | 897 | FunFam | Replication protein A subunit | 361 | 499 | - | - | |
| Cone12ag0531 | 897 | SUPERFAMILY | Nucleic acid-binding proteins | 6 | 116 | IPR012340 | - | |
| Cone12ag0531 | 897 | FunFam | Replication protein A subunit | 500 | 691 | - | - | |
| Cone12ag0531 | 897 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 250 | 683 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Cone12ag0531 | 897 | ProSiteProfiles | Zinc finger CCHC-type profile. | 784 | 799 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | CDD | RPA1_DBD_B | 383 | 490 | - | - | |
| Cone12ag0531 | 897 | FunFam | Replication protein A subunit | 248 | 358 | - | - | |
| Cone12ag0531 | 897 | SUPERFAMILY | Retrovirus zinc finger-like domains | 811 | 847 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
| Cone12ag0531 | 897 | Pfam | Zinc knuckle | 827 | 842 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | Pfam | Zinc knuckle | 861 | 876 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | Gene3D | - | 778 | 847 | - | - | |
| Cone12ag0531 | 897 | MobiDBLite | consensus disorder prediction | 131 | 170 | - | - | |
| Cone12ag0531 | 897 | ProSiteProfiles | Zinc finger CCHC-type profile. | 862 | 876 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone12ag0531 | 897 | FunFam | Replication protein A subunit | 7 | 122 | - | - | |
| Cone12ag0531 | 897 | Gene3D | - | 854 | 881 | - | - | |
| Cone12ag0531 | 897 | Pfam | Replication factor-A C terminal domain | 533 | 684 | IPR013955 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0531 | Cone-Chr12:3699430 | Cone16ag0210 | Cone-Chr16:1408756 | 5.71E-92 | dispersed | |
| Cone7ag0036 | Cone-Chr7:163234 | Cone12ag0531 | Cone-Chr12:3699430 | 3.31E-253 | transposed | |
| Cone12ag0531 | Cone-Chr12:3699430 | Cone8ag0528 | Cone-Chr8:3851334 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0531 | K07466 | - | csv:101211358 | 1177.93 |