Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0531 ATGGCAGCGGCGGGGGTGGAACTGACGGATGGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGGCGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGGCGGTGAACACTCAGGCGCATCACAGTAGCACCGAAAGGTTCAGGCTTTTGCTTTCCGATGGGACGCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCTGTTGTTCAGCTGAGAGAATATGTTTGTAATCCCATTCAAGATCGACTGATAATAATTGTAATTGAAATGGATCTAATTCTGGAAAAATGTGATATCATTGGTGAACCAGTAGCAGCACCAAAATTGATAAGTGGAAGTGAGAGTGGTGTTCCATCAGCCTCTGGGCTGATTAGTAAACCAAATATTTCTGGAGCCGCTCCTCGGCAATCTAGAATGAACCAACTGGGTAGTTCATTGAACAATTCTGATTCTGGAAGATTTGGTGTGTCAAATGCTCCTCCTCTCTACCCTAAAACGGAGAATGCAACTCGGTTTCATGGCCCAACACCTTTAAGTGTGTCATCTAATGATCAGAATTTGAGTGTTAATAACCCAAGAATGGATGTTCCACAACCACTGCTGAATAATTATGGTCGTCAATCTCCTCAGCCATATAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCACCAAGGATAATACCAATTTCTGCTCTTAATCCTTACCAGGGAAGATGGACAATCAAGGCTCGAGTGACTGCAAAAGCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGGGTAACCTGCTTCAATGCTGTTGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCAAATGATCTGGAGATTTATTTGGAGACTACATCTACAGTACAACCATGCTTTGAGGATGACAAGTGCATTCCCCAACAGCAGTTTCATTTCCGTCCCATAAGTGATGTTGAGGGCCTGGATAACAACAGTGTTGTGGATGTAATTGGTGTAGTCTCATTTATCAGTCCTTCAACTTCTATAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCTCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCAATGTAGATGGGCAAAGGCTGCAAACCATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCTGGTAGAGTCAGTGAATTCAATGGGAAAGCCGTGGGCACTATTTCTACAAGTCAGCTTTTCATAGAGCCAGATTTTCCTGAAGCCCACAGACTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACATCCCGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTCGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAATAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGTCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTAACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTGCCGGCCAAGAGTTTATATTATCTGAAATATGAAGAGCAAGATGATGAGAAATTCGCAGAGATTATCCGTAAGGTTCTATTCACTAAATACAACTTTAAGCTGAAAGTGAAGGAAGAGACATACAGTGATGAGCAGAGGATAAAGTCCACAGTTGTCAAATCAGAAAGGGTAAATTTTTCAGCCGAGTCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTTGAGAACTCGGGTTCTTTCCCCTCAAGAGCAGAAACTACCCAAAATGACCCTGGAATGTACCAAGCTGCAGTTGGAAACCTCACTAATAGACTCCCTATAACAGTTGGAAGTATTGGAACTAGACCACCTATAGTGGCCGGAAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAACACAGCTCATCTAATCAAATGGGTCACTATGGAAACCAGTATAATAGTTCGATTGGTCCTTCAACTGGTCCTACTAATTCCTATATGTACTGTAACAGCTGTGGGGGTAGTGGTCACAGCTCGGTCAACTGCCCGAGTATAATGAATAGTCCTGTACAGCAGCCTGTGGGAGGGAATTCTTCGAATACATTTTCTGGTCCTTCCAGTGGTGGGTCCGGTGAATGCTATAAATGCAACCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAACTTATGGTGGTCATAGTGGTGGGTCTGGCGAATGCTATAAATGTCATCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA 2694 43.65 MAAAGVELTDGAVMVICKGDSTAEKYQPVVQVVDLKAVNTQAHHSSTERFRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNPIQDRLIIIVIEMDLILEKCDIIGEPVAAPKLISGSESGVPSASGLISKPNISGAAPRQSRMNQLGSSLNNSDSGRFGVSNAPPLYPKTENATRFHGPTPLSVSSNDQNLSVNNPRMDVPQPLLNNYGRQSPQPYNQPPPMYVNKGPVARNEAPPRIIPISALNPYQGRWTIKARVTAKAELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLETTSTVQPCFEDDKCIPQQQFHFRPISDVEGLDNNSVVDVIGVVSFISPSTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCNVDGQRLQTMCDSGAFPVLAVKSGRVSEFNGKAVGTISTSQLFIEPDFPEAHRLKDWFEKEGRNIPSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWIIVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKSERVNFSAESRYLLELMDKLKVENSGSFPSRAETTQNDPGMYQAAVGNLTNRLPITVGSIGTRPPIVAGNFSGNSNSNPGREHSSSNQMGHYGNQYNSSIGPSTGPTNSYMYCNSCGGSGHSSVNCPSIMNSPVQQPVGGNSSNTFSGPSSGGSGECYKCNQPGHWARDCPGLGGTVPPTYGGHSGGSGECYKCHQPGHWARDCPGLGGTVPPAYGGGSGGYAARR 897
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3699430 3702987 - Conep12aG0055200.1 Cone12ag0531 449375
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0531 897 CDD RPA1_DBD_C 517 690 IPR047192 -
Cone12ag0531 897 Gene3D - 499 691 IPR012340 -
Cone12ag0531 897 Pfam OB-fold nucleic acid binding domain 262 345 IPR004365 GO:0003676(InterPro)
Cone12ag0531 897 CDD RPA1_DBD_A 251 354 - -
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 828 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 827 843 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 783 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 861 877 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Pfam Replication protein A OB domain 372 475 IPR031657 -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 367 496 IPR012340 -
Cone12ag0531 897 Pfam Replication factor-A protein 1, N-terminal domain 8 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone12ag0531 897 SUPERFAMILY Retrovirus zinc finger-like domains 849 881 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Gene3D - 248 357 IPR012340 -
Cone12ag0531 897 Gene3D - 6 121 IPR012340 -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 131 202 - -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 248 359 IPR012340 -
Cone12ag0531 897 NCBIfam replication factor-a protein 1 (rpa1) 195 690 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 514 691 IPR012340 -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 739 772 - -
Cone12ag0531 897 Gene3D - 361 498 IPR012340 -
Cone12ag0531 897 CDD RPA1N 11 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone12ag0531 897 FunFam Replication protein A subunit 361 499 - -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Cone12ag0531 897 FunFam Replication protein A subunit 500 691 - -
Cone12ag0531 897 PANTHER REPLICATION FACTOR A 1, RFA1 250 683 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 784 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 CDD RPA1_DBD_B 383 490 - -
Cone12ag0531 897 FunFam Replication protein A subunit 248 358 - -
Cone12ag0531 897 SUPERFAMILY Retrovirus zinc finger-like domains 811 847 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 MobiDBLite consensus disorder prediction 187 202 - -
Cone12ag0531 897 Pfam Zinc knuckle 827 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Pfam Zinc knuckle 861 876 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Gene3D - 778 847 - -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 131 170 - -
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 862 876 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 FunFam Replication protein A subunit 7 122 - -
Cone12ag0531 897 Gene3D - 854 881 - -
Cone12ag0531 897 Pfam Replication factor-A C terminal domain 533 684 IPR013955 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0531 Cone-Chr12:3699430 Cone16ag0210 Cone-Chr16:1408756 5.71E-92 dispersed
Cone7ag0036 Cone-Chr7:163234 Cone12ag0531 Cone-Chr12:3699430 3.31E-253 transposed
Cone12ag0531 Cone-Chr12:3699430 Cone8ag0528 Cone-Chr8:3851334 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0531 K07466 - csv:101211358 1177.93