Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0531 ATGGCAGCGGCGGGGGTGGAACTGACGGATGGGGCGGTAATGGTGATATGCAAGGGCGATTCTACGGCGGAGAAGTACCAGCCGGTGGTACAAGTAGTGGACCTCAAGGCGGTGAACACTCAGGCGCATCACAGTAGCACCGAAAGGTTCAGGCTTTTGCTTTCCGATGGGACGCATTACCAGCAAGGAATGCTCGGCACACAGTTGAATGGATTGGTGAAGAGCGGGAAGTTGCAGAAAGGCTCTGTTGTTCAGCTGAGAGAATATGTTTGTAATCCCATTCAAGATCGACTGATAATAATTGTAATTGAAATGGATCTAATTCTGGAAAAATGTGATATCATTGGTGAACCAGTAGCAGCACCAAAATTGATAAGTGGAAGTGAGAGTGGTGTTCCATCAGCCTCTGGGCTGATTAGTAAACCAAATATTTCTGGAGCCGCTCCTCGGCAATCTAGAATGAACCAACTGGGTAGTTCATTGAACAATTCTGATTCTGGAAGATTTGGTGTGTCAAATGCTCCTCCTCTCTACCCTAAAACGGAGAATGCAACTCGGTTTCATGGCCCAACACCTTTAAGTGTGTCATCTAATGATCAGAATTTGAGTGTTAATAACCCAAGAATGGATGTTCCACAACCACTGCTGAATAATTATGGTCGTCAATCTCCTCAGCCATATAATCAGCCACCTCCAATGTATGTCAATAAGGGACCAGTAGCAAGAAATGAAGCTCCACCAAGGATAATACCAATTTCTGCTCTTAATCCTTACCAGGGAAGATGGACAATCAAGGCTCGAGTGACTGCAAAAGCAGAACTCAGACGCTATAATAATACTCGAGGTGATGGGAAAGTGTTCTCTTTTGACCTTCTTGATTCTGATGGTGGAGAAATTCGGGTAACCTGCTTCAATGCTGTTGCTGATCAGTTTTATGACCAGATTGAAATGGGTAAGGTATATTTGATATCCAAGGGTAGCTTGAAACCTGCTCGAAAGGATTTTAATAATCTCTCAAATGATCTGGAGATTTATTTGGAGACTACATCTACAGTACAACCATGCTTTGAGGATGACAAGTGCATTCCCCAACAGCAGTTTCATTTCCGTCCCATAAGTGATGTTGAGGGCCTGGATAACAACAGTGTTGTGGATGTAATTGGTGTAGTCTCATTTATCAGTCCTTCAACTTCTATAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCTCTCCAACTAAAAGACATGTCTGGCCGAAGTGTTGAGTTGACTTTATGGGGAAATTTCTGCAATGTAGATGGGCAAAGGCTGCAAACCATGTGTGATTCTGGTGCATTCCCTGTTCTTGCTGTGAAATCTGGTAGAGTCAGTGAATTCAATGGGAAAGCCGTGGGCACTATTTCTACAAGTCAGCTTTTCATAGAGCCAGATTTTCCTGAAGCCCACAGACTAAAGGATTGGTTTGAGAAGGAAGGAAGGAACATCCCGTCTATATCCATTTCCAGGGAAAGCTCTGGTGTTGGTAAGACAGATGTTCGAAAGACAATATCGCAGATTAAGGATGAGAAGCTGGGGACTTCTGAAAAGCCGGATTGGATAATAGTAAATGCAACTGTTTCATTTATTAAGGTGGACAATTTCTGCTACACAGCATGTCCCCTCATGATAGGAGACCGTCAATGCAACAAAAAAGTTGCAAACAATGGAGATGGAAAATGGAGGTGCGATAGATGCGATCAATCCATTGATGAGTGTGACTACAGGTATTTACTCCAGCTCCAAATACAGGACCATTCTGGTTTAACTTGGGTTACTGCATTTCAGGAAAGTGGTGAAGAAATCATGGGTGTGCCGGCCAAGAGTTTATATTATCTGAAATATGAAGAGCAAGATGATGAGAAATTCGCAGAGATTATCCGTAAGGTTCTATTCACTAAATACAACTTTAAGCTGAAAGTGAAGGAAGAGACATACAGTGATGAGCAGAGGATAAAGTCCACAGTTGTCAAATCAGAAAGGGTAAATTTTTCAGCCGAGTCCAGATATCTATTAGAATTGATGGATAAGCTCAAAGTTGAGAACTCGGGTTCTTTCCCCTCAAGAGCAGAAACTACCCAAAATGACCCTGGAATGTACCAAGCTGCAGTTGGAAACCTCACTAATAGACTCCCTATAACAGTTGGAAGTATTGGAACTAGACCACCTATAGTGGCCGGAAACTTTTCTGGGAATAGCAACAGCAACCCTGGAAGAGAACACAGCTCATCTAATCAAATGGGTCACTATGGAAACCAGTATAATAGTTCGATTGGTCCTTCAACTGGTCCTACTAATTCCTATATGTACTGTAACAGCTGTGGGGGTAGTGGTCACAGCTCGGTCAACTGCCCGAGTATAATGAATAGTCCTGTACAGCAGCCTGTGGGAGGGAATTCTTCGAATACATTTTCTGGTCCTTCCAGTGGTGGGTCCGGTGAATGCTATAAATGCAACCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAACTTATGGTGGTCATAGTGGTGGGTCTGGCGAATGCTATAAATGTCATCAACCTGGACATTGGGCTAGAGATTGTCCGGGTTTAGGAGGCACTGTTCCTCCAGCTTATGGTGGTGGTAGTGGTGGATATGCTGCTAGGAGATAA 2694 43.65 MAAAGVELTDGAVMVICKGDSTAEKYQPVVQVVDLKAVNTQAHHSSTERFRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSVVQLREYVCNPIQDRLIIIVIEMDLILEKCDIIGEPVAAPKLISGSESGVPSASGLISKPNISGAAPRQSRMNQLGSSLNNSDSGRFGVSNAPPLYPKTENATRFHGPTPLSVSSNDQNLSVNNPRMDVPQPLLNNYGRQSPQPYNQPPPMYVNKGPVARNEAPPRIIPISALNPYQGRWTIKARVTAKAELRRYNNTRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYDQIEMGKVYLISKGSLKPARKDFNNLSNDLEIYLETTSTVQPCFEDDKCIPQQQFHFRPISDVEGLDNNSVVDVIGVVSFISPSTSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCNVDGQRLQTMCDSGAFPVLAVKSGRVSEFNGKAVGTISTSQLFIEPDFPEAHRLKDWFEKEGRNIPSISISRESSGVGKTDVRKTISQIKDEKLGTSEKPDWIIVNATVSFIKVDNFCYTACPLMIGDRQCNKKVANNGDGKWRCDRCDQSIDECDYRYLLQLQIQDHSGLTWVTAFQESGEEIMGVPAKSLYYLKYEEQDDEKFAEIIRKVLFTKYNFKLKVKEETYSDEQRIKSTVVKSERVNFSAESRYLLELMDKLKVENSGSFPSRAETTQNDPGMYQAAVGNLTNRLPITVGSIGTRPPIVAGNFSGNSNSNPGREHSSSNQMGHYGNQYNSSIGPSTGPTNSYMYCNSCGGSGHSSVNCPSIMNSPVQQPVGGNSSNTFSGPSSGGSGECYKCNQPGHWARDCPGLGGTVPPTYGGHSGGSGECYKCHQPGHWARDCPGLGGTVPPAYGGGSGGYAARR 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3699430 3702987 - Conep12aG0055200.1 Cone12ag0531 449375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0531 897 CDD RPA1_DBD_C 517 690 IPR047192 -
Cone12ag0531 897 Gene3D - 499 691 IPR012340 -
Cone12ag0531 897 Pfam OB-fold nucleic acid binding domain 262 345 IPR004365 GO:0003676(InterPro)
Cone12ag0531 897 CDD RPA1_DBD_A 251 354 - -
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 828 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 827 843 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 783 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 SMART c2hcfinal6 861 877 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Pfam Replication protein A OB domain 372 475 IPR031657 -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 367 496 IPR012340 -
Cone12ag0531 897 Pfam Replication factor-A protein 1, N-terminal domain 8 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone12ag0531 897 SUPERFAMILY Retrovirus zinc finger-like domains 849 881 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Gene3D - 248 357 IPR012340 -
Cone12ag0531 897 Gene3D - 6 121 IPR012340 -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 131 202 - -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 248 359 IPR012340 -
Cone12ag0531 897 NCBIfam replication factor-a protein 1 (rpa1) 195 690 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 514 691 IPR012340 -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 739 772 - -
Cone12ag0531 897 Gene3D - 361 498 IPR012340 -
Cone12ag0531 897 CDD RPA1N 11 108 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cone12ag0531 897 FunFam Replication protein A subunit 361 499 - -
Cone12ag0531 897 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Cone12ag0531 897 FunFam Replication protein A subunit 500 691 - -
Cone12ag0531 897 PANTHER REPLICATION FACTOR A 1, RFA1 250 683 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 784 799 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 CDD RPA1_DBD_B 383 490 - -
Cone12ag0531 897 FunFam Replication protein A subunit 248 358 - -
Cone12ag0531 897 SUPERFAMILY Retrovirus zinc finger-like domains 811 847 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 MobiDBLite consensus disorder prediction 187 202 - -
Cone12ag0531 897 Pfam Zinc knuckle 827 842 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Pfam Zinc knuckle 861 876 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 Gene3D - 778 847 - -
Cone12ag0531 897 MobiDBLite consensus disorder prediction 131 170 - -
Cone12ag0531 897 ProSiteProfiles Zinc finger CCHC-type profile. 862 876 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0531 897 FunFam Replication protein A subunit 7 122 - -
Cone12ag0531 897 Gene3D - 854 881 - -
Cone12ag0531 897 Pfam Replication factor-A C terminal domain 533 684 IPR013955 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0531 K07466 - - csv:101211358 1177.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0531 Cone-Chr12:3699430 Cone16ag0210 Cone-Chr16:1408756 5.71E-92 dispersed
Cone7ag0036 Cone-Chr7:163234 Cone12ag0531 Cone-Chr12:3699430 3.31E-253 transposed
Cone12ag0531 Cone-Chr12:3699430 Cone8ag0528 Cone-Chr8:3851334 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1488 . 2 874 Core DNA Replication Machinery Family AT4G14700 59.5 3.9e-283 971.5
Cone11ag1488 . 1 874 Core DNA Replication Machinery Family AT4G12620 60.9 1.2e-292 1003.0
Cone19ag0109 . 2 357 Core DNA Replication Machinery Family AT2G37560 66.3 3.0e-136 482.3
Cone13ag0792 . 5 417 Core DNA Replication Machinery Family AT2G01120 63.3 9.1e-151 530.8
Cone14ag0366 . 1 535 Core DNA Replication Machinery Family AT4G29910 56.1 8.7e-165 577.8
Cone19ag0949 . 1 275 Core DNA Replication Machinery Family AT1G26840 64.7 6.9e-94 341.3
Cone14ag0637 . 1 946 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1381.3
Cone9ag0904 . 1 578 Core DNA Replication Machinery Family AT5G46280 79.8 6.1e-267 917.1
Cone3ag1220 . 1 839 Core DNA Replication Machinery Family AT2G16440 70.4 0.0e+00 1122.8
Cone16ag0446 . 1 728 Core DNA Replication Machinery Family AT2G07690 75.5 1.4e-313 1072.4
Cone2ag0557 . 44 541 Core DNA Replication Machinery Family AT2G07690 63.4 4.1e-191 665.6
Cone5ag1384 . 7 783 Core DNA Replication Machinery Family AT5G44635 69.2 0.0e+00 1119.4
Cone20ag0983 . 5 719 Core DNA Replication Machinery Family AT4G02060 83.2 0.0e+00 1200.7
Cone5ag1091 . 31 492 Core DNA Replication Machinery Family AT2G29680 56.3 1.7e-143 506.9
Cone1ag0580 . 96 449 Core DNA Replication Machinery Family AT2G29680 59.6 1.1e-107 387.9
Cone5ag1091 . 32 453 Core DNA Replication Machinery Family AT1G07270 56.0 2.7e-127 453.0
Cone1ag0580 . 96 427 Core DNA Replication Machinery Family AT1G07270 61.4 3.5e-103 372.9
Cone7ag0082 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.8 3.6e-254 874.8
Cone4ag0091 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.5 1.5e-252 869.4
Cone19ag1277 . 20 800 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1097.4
Cone8ag1012 . 1276 1913 Core DNA Replication Machinery Family AT2G14050 76.8 3.9e-286 981.1
Cone12ag0982 . 6 505 Core DNA Replication Machinery Family AT2G14050 59.2 1.7e-185 646.7
Cone16ag0785 . 5 334 Core DNA Replication Machinery Family AT2G20980 59.8 4.9e-106 382.1
Cone2ag0356 . 1 199 Core DNA Replication Machinery Family AT1G80190 70.8 3.8e-78 288.5
Cone10ag0951 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.9e-59 224.6
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT1G19080 69.8 1.8e-71 266.2
Cone11ag1192 . 1 182 Core DNA Replication Machinery Family AT3G55490 69.8 1.8e-71 266.2
Cone14ag0711 . 15 164 Core DNA Replication Machinery Family AT5G49010 64.7 4.5e-49 191.8
Cone11ag1102 . 1 1553 Core DNA Replication Machinery Family AT5G67100 60.8 0.0e+00 1779.6
Cone19ag1109 . 140 760 Core DNA Replication Machinery Family AT1G67630 61.1 1.4e-221 766.5
Cone13ag1130 . 4 313 Core DNA Replication Machinery Family AT1G67630 50.2 2.7e-79 293.9
Cone6ag0848 . 1 320 Core DNA Replication Machinery Family AT5G41880 65.0 4.2e-130 462.2
Cone9ag0846 . 1 231 Core DNA Replication Machinery Family AT5G41880 64.9 1.9e-90 330.5
Cone9ag1229 . 3 1010 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1621.7
Cone13ag0534 . 4 439 Core DNA Replication Machinery Family AT2G42120 78.3 1.1e-207 719.9
Cone19ag0482 . 4 439 Core DNA Replication Machinery Family AT2G42120 76.7 2.1e-203 705.7
Cone1ag0529 . 1 2094 Core DNA Replication Machinery Family AT1G08260 69.8 0.0e+00 2929.0
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT1G08260 57.5 4.5e-57 221.9
Cone5ag1350 . 1 151 Core DNA Replication Machinery Family AT1G08260 64.2 1.7e-48 193.4
Cone1ag0529 . 10 2211 Core DNA Replication Machinery Family AT2G27120 66.6 0.0e+00 2889.4
Cone5ag1351 . 2 187 Core DNA Replication Machinery Family AT2G27120 53.2 1.3e-48 193.7
Cone5ag1350 . 9 151 Core DNA Replication Machinery Family AT2G27120 66.4 7.3e-47 188.0
Cone19ag0415 . 7 459 Core DNA Replication Machinery Family AT5G22110 64.9 3.6e-175 612.1
Cone5ag1309 . 1 956 Core DNA Replication Machinery Family AT5G22010 63.0 1.9e-310 1062.4
Cone12ag0326 . 23 342 Core DNA Replication Machinery Family AT1G63160 92.8 6.2e-171 597.4
Cone8ag0325 . 20 205 Core DNA Replication Machinery Family AT1G63160 53.0 5.1e-80 295.4
Cone3ag0535 . 41 394 Core DNA Replication Machinery Family AT5G27740 85.9 5.1e-179 624.4
Cone4ag1422 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.8e-154 542.7
Cone7ag1515 . 2 137 Core DNA Replication Machinery Family AT1G21690 70.1 2.4e-45 180.3
Cone17ag1292 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.9 4.2e-152 535.0
Cone20ag0436 . 1 297 Core DNA Replication Machinery Family AT1G77470 61.2 6.6e-89 325.1
Cone7ag0036 . 24 617 Core DNA Replication Machinery Family AT2G06510 69.5 5.4e-253 870.9
Cone12ag0531 . 32 688 Core DNA Replication Machinery Family AT2G06510 53.7 3.6e-204 708.8
Cone8ag0528 . 32 695 Core DNA Replication Machinery Family AT2G06510 53.1 9.7e-202 700.7
Cone2ag0799 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.7 9.4e-250 860.1
Cone16ag0210 . 1 628 Core DNA Replication Machinery Family AT5G08020 67.2 5.1e-248 854.4
Cone12ag0531 . 6 811 Core DNA Replication Machinery Family AT5G45400 50.2 1.3e-233 807.0
Cone2ag0799 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.3 2.9e-254 875.2
Cone16ag0210 . 1 622 Core DNA Replication Machinery Family AT5G61000 69.6 3.2e-253 871.7
Cone12ag0531 . 6 798 Core DNA Replication Machinery Family AT4G19130 55.3 3.2e-234 808.9
Cone8ag0528 . 6 820 Core DNA Replication Machinery Family AT4G19130 54.2 6.1e-233 804.7
Cone5ag0109 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 1.5e-182 636.3
Cone1ag1587 . 1 361 Core DNA Replication Machinery Family AT5G26680 87.8 3.7e-181 631.7
Cone7ag0441 . 2 1118 Core DNA Replication Machinery Family AT1G08840 52.8 1.4e-306 1049.7
Cone1ag1430 . 1 296 Core DNA Replication Machinery Family AT2G25100 67.8 7.6e-114 407.5
Cone1ag0493 . 170 805 Core DNA Replication Machinery Family AT1G08130 76.3 3.5e-289 991.5
Cone19ag1014 . 25 624 Core DNA Replication Machinery Family AT1G08130 63.9 3.2e-226 782.3
Cone6ag0127 . 127 494 Core DNA Replication Machinery Family AT1G08130 66.8 2.9e-134 476.9
Cone1ag0493 . 206 805 Core DNA Replication Machinery Family AT1G49250 67.8 2.9e-236 815.5
Cone19ag1014 . 65 624 Core DNA Replication Machinery Family AT1G49250 57.8 4.2e-187 652.1
Cone6ag0127 . 165 495 Core DNA Replication Machinery Family AT1G49250 61.1 4.0e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35